KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123409101
Entry
123409101         CDS       T11213                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hvg03009]
    123409101
Ribosome biogenesis [BR:hvg03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    123409101
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_SCAP Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_RIG_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 123409101
NCBI-ProteinID: XP_044958017
LinkDB
Position
7H:497912595..497917816
AA seq 418 aa
MAPPSQLVLAASSTDAGVAAWDLRTGAEAIRHRPCASRPRAIAAVAGRFLAAAQVAAGNS
APIHYYHWDKPQVAVKSFPAEPIRALIADPEGNYLIGGGVSGDIFFWEVASGELLVRWHA
HYRDVRCLALYDMLLVSGSEDGSIKVWDLLTMLDEQSRFEAQTPYLYNFNQHTLPVTDIA
CFHGAIAVSSSEDRTCKIWSLSEGRMLRSITFPAIIDSVEIDPRSHIFYAGGRDGKIYVT
VMGVDVSSQGRDDSSILGILDDHSKAVTSLTSSTDGLLLVSGSEDGNVRVWDTRSQQVTR
KFKHSQGPVTNVLIVTPKRLNLPPLQPLRKVCAASGEVEPRAVILPNLENDVHIAGNLSS
NRLEQLLESHQQHGSSRLFDFGVSTINGVPNQQGTEWRSKYLELQDLFVHEVLGDMPS
NT seq 1257 nt   +upstreamnt  +downstreamnt
atggcgccgccgtcgcaactggtgcttgcggcctcctcaaccgacgccggcgtggccgcg
tgggatctccgcacaggggccgaggccatccgccaccgcccctgcgcctctcggccacgt
gccatcgctgccgtcgccggccgcttcctcgccgccgcccaagtcgccgccggcaactcc
gcccccatccactactaccactgggacaagcctcaggtggctgtgaagagcttccccgcc
gagccaatccgcgcgctcattgctgatccggaggggaactatctcatcggcggcggtgtg
tccggtgacatattcttttgggaggtggcaagtggagagctgcttgtccgatggcatgct
cattatcgtgatgttaggtgccttgccctctatgacatgttgcttgtctcggggtccgag
gatgggagcatcaaagtttgggatcttctcacgatgcttgatgagcaatcaaggtttgag
gcacagacaccatacctatacaactttaatcagcacacactgcctgtaactgatattgct
tgttttcatggagcaattgccgtgtcatcttcagaggaccgcacttgtaaaatatggagt
ctatcagagggcaggatgctgagaagtattacatttcctgctatcattgattctgtcgaa
atagacccaagaagtcatattttctatgctggcggtagagatggaaagatatatgttact
gttatgggtgttgatgtctcttctcagggccgtgatgattcgtctattcttggtattctg
gatgaccacagcaaggcggtaacgagcttaacatcaagtacagatggccttctactggtc
tctggttcggaggatggtaatgttcgggtttgggataccagaagtcagcaagtaacccga
aaattcaaacactcccaaggtccagtaactaatgttctcatagtaacacccaaaagatta
aatctgccacctttacaaccattgcgtaaagtgtgcgcagcaagtggcgaagttgaacca
cgagctgtaattctgcccaaccttgaaaatgatgttcatattgctggaaatctcagctct
aaccgtctagagcagctcttggaatcacatcagcagcatggcagctctaggttatttgat
ttcggagtgagcactatcaatggcgtaccaaaccaacaggggacagaatggagaagtaaa
tacctagagttgcaggatctttttgtgcacgaggttcttggtgatatgccatcttaa

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