Hordeum vulgare subsp. vulgare (domesticated barley): 123409283
Help
Entry
123409283 CDS
T11213
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123409283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123409283
Membrane trafficking [BR:
hvg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123409283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
Beta-prop_EML_2
VPS8_N
Beta-prop_EML
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_THOC3
WD40
WD40_Gbeta
TPR_Vps41
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR3_2nd
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
123409283
NCBI-ProteinID:
XP_044958160
LinkDB
All DBs
Position
7H:complement(552374924..552388579)
Genome browser
AA seq
1937 aa
AA seq
DB search
MADGPVSLVLSSSPAMASKPPPLPHELDLDAFLPSSQASSDADADRRCAVDDLLLLLSSS
DSDEDDEPNRTPSTKYKPLTRTKVTPPPPKPSPSLLPLPSGSPGRSTSALPSATHSYLVS
RTFSNKATSSSRPVPSLFRGVRPSPKPGAAFAAAAAASRAVLTPHAAAIKSRRTASTPIE
KLLDQGSECILFTGNFKGDDVAEKVSEEVVARVTDETVGGNGVEELEVGKHGEVGTGENP
EPSESVDIGNVDFVDAEHVNGNEQLEGKILAETDQRGSQIRLIVEENGDEPISNGIFVES
GDIQDGSVSHQKTDNGLAVERSETDLEEQMKSERIIDKVIEETLEISRMAVKKTEKKPKA
PIKPLEWAEELEKSHASFVQHWEEGAAAQRMRLEGIGKGQPAIGYMQIEVDNPITRAMAS
PSFRQEHGSPQVLAVHRSYIAMGMSNGSVIIIPSKYSSNQADDTDAKMLFFWNQGEKTQS
PVTAMCFNPQGDLLLVGYGDGHMTIWDVQKATAAKVIYGEHTGAVVHVCFIHQCKAITGD
SKGLVLLHTFSIIPVINRLTVKGIQRLFDGHTGIVLSACPLLADDSFGSGNSSMPDSLTT
SSSGGHGSMMGGVVGVDSRWKFFNEGSSPMEDGVTVMFIMHQHALVVRLRTNIDHVDHIE
TFSRPEGAREGSIAYAAWKYTSSLSHSSPTDEDRVSWLVLAWDRQVQVSKFVKSKMIKHN
DWKLDSVAVGVAWLKDKMLAVLNLRGQLCLFSKDGSELRRTIFILDGLVLEDSILYHTHF
SNRFGNPERHFNNSVAVRGATVYILGPSFLTVSRLLPWKERIEALKRAGDWMGAMDMAMK
LYDGHTQGVVDLPSKVDSIREAIMPGLLELLLSYIDYVFEYISIALSNHTGKRGAADGLI
NADRSLLTEREEEYARVGGVAVEFCVHIGRNDILFDTVFSKFVAAQSGGVFLEALEPYIL
KDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDIPSLDFNQVVRLCREHGLYGALIY
LFNQGLNDFRTPLEELLYVLQNATRKDATCYRMLVYLKYCFQGLAFPPGHGIIPRAQVHS
VRRELVQFMLEESKMLTSEVFKGFSSSGKCPNICYLLWMDTEATLEVVKCAFAQENFQPT
SYTPDASVSKDEDDTNIERTDSQNVLVQSLVDTIIHITGLENEAIHSVLVGTAESEESET
WPSVKDFGYIIEFVSFYISNKRARSSQRVLKHILKYFTSSSTPSYNDNNVLAQKEVLQLF
NVVPHTDWNSDYVLHLCLDAHFHQACGRIYTARNQNLSALDSYMKDRVEPYHAFIFINRK
LFQLADDEALSFRSTVIFRFAELVNLSRECAFVLFLDHFQNEIQQILSEFHSDNRSHFLF
LKTAMEVHLSGKLDFSSLTAQDNEIGARHYLSGELEDYLQRLSNVPKLFDRNLVSMIDEL
FEPYLKLLCQYEPRSVLKFLETYESNRLDGCLQSCLDYGVTDAAAFLQERRGYVRSALTL
VLAGLDEKISQFITSLENAFSHISPKRISEIEQPAIVLKMSEAHPVLDTLRSSIGLCQRN
SQRSDPEKSQSLWFQLLDSFSEPLKKLYGSKDVNGKGCRSEGGETTNGHPTGKGFSQQMV
ISAYERCLNTLWRVFSQFVGEIIEAMAGYIPLPTIMSKLLADNGSQEFGDFKLVIHRMLS
MYHYEKIILETTKSVIEDDSFYTLSLLKRGVCHGFAPHTFVCCACSCSVSKVVTSAVRVF
SCGHATHLHCESEQSKSSSEDFKDGCSVCLLTSDTQTGKKSPIISKNGLPKYPMVENEVA
YGVYNNNETHHVERSRGLQQMSRFEILGGLQKAQKSLHIETVPPLKLSPPAIYHEKIXKR
VRLVGESSRPSIGSENPQQRLHMKEAKSNQRISWLGESIRHLARSEKAAENTTHGVKTKE
IRKLAFAEVKQIRFSQE
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggccccgtctccctcgtgttatcgtcgtcgcccgcgatggcatccaagcca
ccgcctctgccccatgagcttgacctagatgccttcctcccgtcgtctcaagcctcctcc
gacgctgacgccgatcgccgctgcgctgtcgacgacctgctcctcctcctctcctcgtcc
gactccgacgaagacgacgagccaaaccgtacacccagcaccaaatacaaacctctgacc
cgtaccaaagtcacaccgccgcctcctaaaccttccccatctcttctgccgttgccttcc
gggtcccccgggaggtccacatcagcattgccgtcggctacgcactcctaccttgtctct
agaaccttttcgaacaaagctacctcctcgtcgaggccagtcccctcgctcttccggggt
gtccgccccagccctaaaccaggcgccgccttcgctgcagccgcggccgcgtcccgcgct
gttcttactccgcacgctgctgcaattaagtcgcggcgcactgcctccacgcccatagag
aagctcctcgaccaaggctccgagtgtatcctttttaccggaaatttcaaaggagatgat
gtagctgagaaggttagtgaggaagtggttgctagggtgacggacgaaactgtcggcggg
aatggagttgaagaattggaagtgggcaagcacggtgaagtggggactggagagaatcct
gagccctcagaatcggtggacataggcaatgtcgactttgttgatgcggaacatgtcaat
ggcaatgagcaacttgagggcaagattttggctgaaaccgatcaacgcgggagtcaaatt
cggcttattgttgaggaaaatggtgatgagccaattagcaacggaatttttgtggaatct
ggtgacattcaggatgggtcagtttcccatcaaaagactgataacgggctggcagtcgaa
cgttctgaaactgatttggaagagcaaatgaaatctgagaggatcatcgataaggtgatc
gaagagacgttggagatcagcaggatggctgtgaaaaagacggagaaaaagccaaaggcg
ccgataaaaccattggagtgggctgaggagctcgagaagagtcatgcctcatttgtgcag
cactgggaggagggagcagcagcacaacgaatgcgtctggaggggattgggaaaggccaa
cctgctattggttacatgcagattgaggtggacaacccaataactcgtgccatggcctct
ccgtcttttaggcaggaacatggctctcctcaggtcttagcagtacataggagctatatt
gccatgggcatgtccaatggatctgttatcatcatcccaagcaaatactccagcaatcaa
gctgatgatacagatgcaaagatgctattcttttggaaccaaggtgaaaaaactcaatca
ccagtgactgccatgtgctttaacccgcaaggggatcttctgctagtaggatatggtgat
ggtcatatgacaatttgggatgtacagaaggctactgcagcaaaagtcatatatggtgag
catacaggagctgtagtgcatgtctgttttatccaccaatgtaaagccatcactggtgat
tcaaaagggcttgttcttctgcacacattctcaattatccccgtcattaatcgcttgact
gtcaagggaatccagcgcctttttgatgggcatactggaatcgtgctctcagcctgtcct
cttctagcggatgactcctttggttctggcaactcatctatgccagacagcctaacaact
tcctccagtggtggtcatggcagcatgatgggaggtgtagttggagtagattccagatgg
aagtttttcaatgaaggttcttctccaatggaggatggtgttacagtcatgttcattatg
catcaacatgctcttgtggttagactccgtaccaacattgaccatgttgaccatattgag
accttctctagaccagaaggagcacgagaagggtcaattgcttatgctgcatggaaatac
acatcatccttgagtcattcatcgccaactgatgaagaccgggtatcttggcttgtgctt
gcatgggaccgtcaagtacaagtgtcaaaatttgttaaatcaaagatgatcaaacataat
gactggaagcttgatagtgtcgctgttggtgttgcctggttaaaggataagatgttagct
gtccttaacttgagagggcagctctgtttgttctcaaaggatggcagtgagcttcgcagg
actatctttattcttgatggcttggtcttagaagacagcatactgtaccatacacatttt
tctaacaggtttggtaaccctgagaggcattttaacaactcggtagcagtaaggggtgct
acagtttatattcttggcccaagctttcttacagtttcgcgacttcttccatggaaagag
cggattgaagcactaaagagagctggtgattggatgggtgcaatggacatggcaatgaag
ctttatgacggtcacacacagggtgttgttgatcttccgagtaaagttgattctataagg
gaagccataatgccgggtctattagagttgctcctgtcatatattgattatgtctttgaa
tatatttcaattgcattgtcaaaccatactggaaaaaggggagcagctgatggcctgata
aacgccgatagatccctgctgacagagagagaagaagagtatgcccgtgtaggaggggtt
gcagtcgagttttgtgttcacattggacggaatgacatcctgtttgacacagtcttttct
aagtttgttgctgctcaaagtggaggtgtatttctagaggcactagagccatatatattg
aaagatatgcttggttctttaccccctgagatcatgcaagctctagtagagcattatagt
ggcaaaggatggttgcagcgagtcgaacaatgcattcttcatatggatattccatcactg
gattttaatcaggtagtcagattgtgtcgtgagcatgggttatatggtgctctaatatat
ttatttaaccaaggcctgaatgatttccgtacacctctagaggaacttctatatgttctc
cagaacgctactagaaaagatgctacttgctacagaatgcttgtttatctgaagtattgc
ttccagggcctagcatttcctccagggcatggaataattcccagagcccaagttcattca
gtgagaagagaacttgtgcaattcatgcttgaggagtctaaaatgctcacttctgaagta
tttaagggtttcagttcttctggaaaatgcccaaacatatgctatctactatggatggat
acagaagctactctggaagttgtcaagtgtgcttttgcacaagagaattttcaacctact
tcttatactcctgatgcatctgtgtccaaggatgaagatgatactaatattgaaaggaca
gatagtcaaaatgtcttggtacaaagtttagttgacacaatcattcatattactggtttg
gaaaatgaggcaatccattccgttcttgtgggtactgctgagtcagaagaatcagaaact
tggccttcagtgaaggattttggttatataattgaatttgtgtctttttacatttccaat
aaaagggcaaggtcatctcaacgagttcttaagcacattcttaaatacttcacgtcatcc
agtactccatcatataatgataacaatgtgctagctcagaaagaagttcttcagctcttc
aatgtggttcctcatactgactggaattctgattatgtgttgcacctttgtttagatgcc
cactttcatcaggcatgtggcaggatatatacagccagaaatcaaaatttgtctgcttta
gatagttacatgaaggacagagtggaaccataccatgcttttatcttcatcaatagaaag
ttatttcagttggcagatgatgaagctttatcgtttcgttccacagtaatatttcgtttt
gccgagctggtcaatctaagcagggagtgcgcatttgtcttgttccttgatcattttcaa
aatgagatccagcaaatattgtcagagtttcattctgataaccgcagccactttcttttc
ctgaaaactgcaatggaagtacacttgtcaggaaaacttgacttcagttcactaactgcc
caggacaatgaaattggtgcacgtcactacttatctggtgaacttgaagattatctacag
agattatcaaatgtcccaaagttgtttgaccgcaatcttgtttctatgattgatgagtta
tttgaaccctatctgaagcttctatgtcagtatgaaccaaggtcagtcctgaagtttcta
gagacttatgagagcaacagattggacgggtgtttgcagtcctgtctagattatggagtt
acagatgctgccgcatttctgcaagagaggcgtggttatgttcggagtgcgctgacactt
gttctagccggactagatgagaaaattagccagtttatcacttcgctggaaaatgcgttt
tctcatatatcgccaaagaggatctctgaaattgagcaaccagccattgttctaaaaatg
agtgaggctcatccggtgcttgatacattacgttcctctattggattgtgccaaaggaac
tcacagcgctcagacccagagaagtctcaatcactttggtttcaactgcttgactctttt
tcagaaccactgaaaaagttgtatggaagcaaggatgtaaatggaaaaggttgtcggtcc
gaggggggtgaaacaacaaacggacatccaacaggcaaaggattctcacaacaaatggtg
atttcagcttatgaaaggtgtttgaatactctttggagagtattctcacaattcgttgga
gagataattgaggcaatggctgggtatatacccctaccaacaattatgtcaaagctgtta
gctgacaatgggagccaagagtttggtgattttaagcttgtcatacatagaatgctgtct
atgtatcattatgaaaaaataatactggaaacaacgaagtcagttatcgaggatgattcg
ttctataccttgagcttattaaagagaggagtttgtcatggatttgctccacacactttc
gtctgttgtgcatgcagttgctcagtttctaaagttgttacttcagcagttcgagtattc
agttgtgggcatgcaacacatcttcactgtgaatctgaacaaagcaaatcatccagcgag
gattttaaagatggatgttcagtttgtctcttgacgagtgacacacaaaccgggaagaaa
tcacctataatatcaaagaatgggctacccaagtatcccatggttgaaaatgaagtagca
tatggcgtctataataataacgagacacatcatgtcgagagatctcgtgggcttcagcag
atgtcacggtttgaaattctgggaggtctccagaaagctcagaagtctcttcatattgaa
actgtacctccattgaaactttctccgccagctatatatcatgagaagatatagaagaga
gtaaggttggtaggagaatccagcagaccctcaattggaagtgaaaacccacaacaaaga
ttgcacatgaaggaggcaaaatctaatcagcgaataagttggctgggagaatccatcaga
catttagctagaagtgaaaaagccgctgaaaatacgacacacggagtcaaaaccaaagaa
atcaggaaattggcttttgccgaagtcaagcaaattcggttctcacaagaatga
DBGET
integrated database retrieval system
