Hordeum vulgare subsp. vulgare (domesticated barley): 123409329
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Entry
123409329 CDS
T11213
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123409329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123409329
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123409329
Spliceosome [BR:
hvg03041
]
Complex C
Other components
Step II factors
123409329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
nSTAND3
FtsK_SpoIIIE
SLFN-g3_helicase
ATPase
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
123409329
NCBI-ProteinID:
XP_044958199
UniProt:
A0A8I6Z292
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All DBs
Position
7H:64599579..64607125
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AA seq
697 aa
AA seq
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MPSFSSGASPQKQQHNARRKQLIRQQRKSLPIASVEKRLVDEVRKNDTLIVVGETGSGKT
TQLPQFLYDGGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQLGRKVGYSIRFDDSTSN
ATRIKYMTDGLLLREALLDPLLSKYSVVIVDEAHERTVHTDVLLGLLKKVQHSRSLHANK
NGKILSDKQDHSQVSTLKACQGIKTAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYP
VDTLYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLERLIQERARQLPAD
SSKIWITPIYSSLPSEQQMNAFKPAPSGARKVVLATNIAETSVTIPGIKYVIDPGMVKAR
AYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQECEFDKLAESTIPEIKRCN
LANVVLQLKALGIDDIIGFDFMEKPSRTSILKSLEQLILLGALTDDYKLSDPVGKQMARL
PLDPMYSKALIVSSEFKCLEEMLIVVSMLSVESIFFTPREKLEEARAARKSFESSEGDHI
TLVNVYRAAAECLEKSKNANAKEKTMEKALNRWCFENFINYRSLRHARDVHSQIQGHVQQ
MGLNLSSCGDDMVQFRRCLTAAFFLNAAMRQPDGSFRALATGQSVQMHPSSVLFRTKPDC
VIFNELVRTTQNYVKNLTRIDPLWLAELAPQYYATED
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccttctcctccggcgcttccccgcagaagcagcagcataacgcgcggaggaag
cagctgatccgtcagcagaggaagtcgcttcccatcgcgtcagtggagaaaaggcttgtg
gatgaggtgaggaagaatgacacgctgatcgttgtcggcgagaccggtagcggcaaaacg
actcagttgccacagtttttgtatgatggtgggttttgtcaggatggaaaagtcattggc
atcactcagcctcgacgagttgcagctgtgacagtagcaaagcgtgtcgccgaggaatgc
aatgatcagttgggcagaaaggttggatactctataagatttgatgattccacatctaat
gcaacaaggattaaatacatgaccgatggtttacttctaagggaagcccttttggatcca
ctcttgtctaagtatagtgttgtaatcgttgacgaggcccacgaaagaaccgtccatact
gatgtattgctgggtttgttgaaaaaagtgcagcattcccgatctcttcatgcgaataaa
aatgggaagattttgtctgacaaacaagatcactctcaagtttctaccctgaaggcatgc
cagggaataaagactgcacctctaaagctgattattatgtctgctagtctggatgccaag
tgtttttctgattattttggtggtgctaaagctgtacatattcaaggacggcaatacccc
gtcgacacactgtatacttatcagcctgagtcggattatctagatgctacactagttact
atctttcagatccatttggaggaaggacctggagacattcttgcatttttaactggtcaa
gaggagattgaatcactagagaggcttattcaggagcgtgctcgtcaacttccagcagac
agtagcaagatatggattacacctatctactcatctcttccatcagaacagcaaatgaat
gcatttaagccagcaccatctggagcccggaaggtagttctagcaacaaatattgcagag
acttctgtaacgatacctggtattaaatatgttattgatcctgggatggtcaaagcgcgc
gcctacaatcctgtaactggaatggaatcgctaattatcatccctgtctctaaagcacag
gctcttcaaaggagtggccgtgctggacgtgaggggccagggaagtgctttcggttgttc
caagaatgtgagtttgataaactggcggaatctactattcctgagattaagcgatgtaac
ctcgcaaatgttgttctacagctcaaagctcttgggattgatgatatcataggtttcgat
tttatggagaaaccatcaaggacctccattttgaaatcattggagcaattgattttactc
ggagctttgactgatgattataagctgtcagatccagttggtaaacagatggctcggctg
cctttagatccaatgtactccaaggcattgatagtgtcgagcgaattcaagtgcttggaa
gaaatgttgattgtcgtttctatgctttcagtggaatcaattttcttcaccccacgtgag
aagttagaagaggcaagagctgctaggaagagctttgaaagctccgaaggagaccatata
acgttggtgaacgtatatcgagccgctgcagaatgcttggagaagagcaaaaacgcaaat
gccaaagagaaaacaatggaaaaagctttgaacagatggtgctttgaaaactttatcaat
taccgctctctaaggcatgctcgtgatgttcacagccaaatccagggccatgtccaacaa
atggggcttaacctgtcatcgtgcggcgacgacatggtccagttccggaggtgcctcact
gccgctttcttcctgaacgctgcgatgcggcagccagacggatcattcagggctctggcg
acggggcagagcgtgcagatgcacccttcgtcggtgctgttccggaccaagccggactgc
gtcatcttcaacgagctggtccggacgacgcagaactacgtcaagaacctcacccggata
gacccgctgtggctggccgagctcgccccgcagtactacgccaccgaggactag
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