Hordeum vulgare subsp. vulgare (domesticated barley): 123409765
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Entry
123409765 CDS
T11213
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123409765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123409765
Membrane trafficking [BR:
hvg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123409765
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_VPS8_2
Beta-prop_EML_2
Beta-prop_EML
VPS8_N
Beta-prop_HPS5
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
WDR55
Beta-prop_WDR5
WD40_Prp19
TPR_Vps41
Beta-prop_THOC3
zf-RING_Vps41
WD40
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_TEP1_2nd
zf_RING_Vps8
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
123409765
NCBI-ProteinID:
XP_044958565
UniProt:
A0A8I6ZEM5
LinkDB
All DBs
Position
7H:597080548..597092818
Genome browser
AA seq
1822 aa
AA seq
DB search
MASQQPPPPHEFDLEAFVPSSPASEADADHRRAVDDLLLILSSSDSDDEPTPTPSTNHEI
LTRIKAPPPPAKPSPSPPPSPSASPGRSASPSAALSSLVSRTFSNSAASSSTSSLKPLPS
LFRGVRPRPKPGAAFAAAAAAASRAVLSPHAAAIRSRRTASAPIEKKLLDQASQAEVADE
VSEEVVARATEETVGGNGVEELEEDRHGEVGTEENSEPSESVDVGNADSVAAENLNVQEQ
LGSQIWLVDEENSDEQIRDGNLVEPGEIVDQDGSVSDEKTDDGLEVELSDTDLEEQVESE
GIIDKVVEERMEMSRMAEKYAEERQNAPMKPLERAEELEKRQASFGQHWEEGAAAQPMRL
EGIGKGQPAIGYMQIEVDNPITRAMASPSFRQEHGSPQVVAVHRSYIAMGMSSGSVIVVP
SKYSIHQADYSDAKMLFFWNQGVKTQSPVTATCFNPQGDLLLVGYGDGHMTIWDVQKATA
AKVIYCEHTGAVVHACFISQSKAITGDSKGLVLLHTFLIIPVINRLTVKGTQCLFDGHSG
IVLSACPLLADESCGSGNSSMQGNLTTSSSGGLGSMMGGVVGVDSGWKFFNEGSSPMEDG
VTVMFIMHQHALVVRLRTNSDHVDHIETFSRPEGAREGSIAYAAWKYTSSSSDSSPIDED
RVSWLALAWDRQVQVAKFVKSKMIKHKDLKLDSAAVGVAWLNDQMLAVLNLRGQLCLFSK
DGTELRRTIFILDGLVFDDSILYHTHFSNRFGNPERDFNNSVAVRGATVYILGPSFLTVS
RLLPWKERIEALKGAGDWIGAMDMAMKLYGGHTQGVIDFPGTVDSIREAIMPYLVELLLS
YIGYVFEYISIALSNRTKKGGAADGLIDSDRSLLTEREEQYARVGGVAVEFCVHIGRNDI
LFDTVFSKFVAAQSGGMFLEVLEPYILKDMLGSLPPEIVQALVEHYSGKGWLQRVEQCIL
HMDISSLDFNQVVRLCREHGLYGALVYLFNQGLNDFRTPLEELLSVIQNTTRKDATCYRM
LVYLKYCFQGLAFPPGHGIIPRAQLHSVRKELLQFMLEESKMHTSEVFKGFSYSSGKCPN
ICYLLWMDTEATLEVVKCAFAQENFEPTSSTADTPVSKDEDDTNIESPDSQNILLQSLVD
TIIHIVGLENEAIHSIFVGIAESEESKLWPSVNDFGYIIEFLSFFISSRRAKSSQRVLKH
ILKYFMSCNTPSHDDKKMLTQKVVLQLFNVVPQTDWNSDYVLHLCLDAHFHQACGRIYTA
RNQNLSALDSYMKDIVEPYQAFIFISKKLFQLAGDEALSFRSTVISRFAELVNLSRECAF
ILFLDHFQNEIQQILSKLRSAKRSHFLFLKTAMEVHLSGKLDFSTLTARNCEIVERRYFS
GELEDYLQRLSNSPKLFEHNLVSMIDELFEPYPKLLCQYEPRSVLKFLETFGSYKLGECL
QFCLDYGVTDAAAFLQEGAGDALSALALVLAGLDEKISQFITSVEDSFSQISSKSISEIE
QPAIVLKMSEAHPVLDALRSSIGLCQRNSECSGPEKSQLLWFQLLDSFSEPLKKLYGSKD
VNGKGCWSEREETTNGYPTGKGFSQQMLISAYQRCLNTLRRVFSQFVGEIIEAMAGYIPL
PEIMSKLLSDNGSQEFGDFKLVIHRMLSMYLHQKRILETAKSLIEDDSFYTLSSLKRGVC
HGFAPHTFVCCVCNFSLSKEGAISAVRVFSCGHATHLHCESEQSKSSIKDFQDGCPVCLS
TSDTQSWNRSPIISENGLPRYPVVENEVPYGVHHNHETDHVERSRGLQQMPRFEILKSLQ
KAQKSSYLNCASVETFSASHIS
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccagcaaccgcctccaccgcatgagttcgacctagaggcctttgtcccgtcg
tctcccgcctccgaagccgacgccgatcaccgccgcgccgtcgacgacctgctcctcatc
ctctcctcgtccgattccgacgacgagccaacccctacacccagcaccaaccacgaaatc
ctgacccgtatcaaagccccgccgccgcccgctaaaccttccccatctcctccgccatcg
ccttccgcgtcccccgggagatccgcatcgccgtcggcggcgctctcctccctcgtctcg
agaaccttttccaatagtgctgcctcatcgtccacctcctcgctgaagccgctcccctcg
ctcttccggggtgtccgcccccgccccaaacccggcgccgcctttgctgcggcggcggcc
gccgcgtcccgcgctgttctcagcccgcacgccgctgcaattaggtcgcggcgcaccgcc
tctgcgcccatagagaagaagctcctcgaccaagcctcccaggcagaagtagctgacgag
gtcagtgaggaagtggttgctagggcgaccgaggaaactgtcggcggtaatggggttgaa
gaattggaagaggacagacacggcgaagtggggactgaagagaattccgagccctctgaa
tcggtggacgtaggcaatgccgattctgttgccgcggagaatctcaatgtgcaggagcaa
cttgggagtcaaatttggcttgttgatgaggaaaacagtgatgagcaaattagggacgga
aatttagtggaacctggtgagattgtggatcaggatgggtcagtgtccgatgagaagact
gatgatgggctggaagttgaactttctgacactgatttggaagagcaagtggaatctgag
gggatcatcgataaggtggtcgaagagaggatggagatgagcaggatggctgaaaaatac
gcggaggaaaggcaaaatgcgccgatgaaaccattggagcgggctgaggagctcgagaag
aggcaggcctcgtttgggcagcactgggaggagggagcagcagcgcaacccatgcgcctg
gaggggattgggaagggccaaccagctattggttacatgcagatcgaggtggacaacccg
ataactcgtgccatggcctctccatcttttagacaggaacatggctctcctcaggtcgtt
gcagtacataggagctatattgccatgggcatgtccagtggatctgttatcgtcgtccca
agcaaatattccatccatcaagctgattattcagatgcaaagatgctgttcttttggaac
caaggtgtaaaaactcaatcaccagtgactgccacgtgctttaacccgcaaggggatctt
ctgctagtaggatatggtgatggtcatatgacaatttgggatgtacagaaggctactgca
gcaaaagtcatatattgtgagcatacaggagctgtagtgcatgcttgttttatcagccaa
tctaaagccatcactggtgattcaaaagggcttgttcttctgcacacattcttgattatc
cctgtcattaatcgtttgactgtcaagggaacccagtgcctttttgatggacatagtgga
attgtgctctcagcctgccctcttctagcggatgaatcctgtggctctggcaactcatct
atgcaaggcaacctaacaacttcctccagtggtggtcttgggagcatgatgggaggtgta
gttggagtagattctggatggaagtttttcaatgaaggttcttctccaatggaagatggt
gttacagtcatgttcattatgcatcaacatgctcttgtggttagactccgaaccaacagt
gaccatgttgaccatattgagaccttttctagaccagaaggagcacgagaagggtcaatt
gcttatgctgcatggaaatacacatcatcctcgagtgattcatcgccaattgatgaagac
cgagtatcttggcttgcgcttgcatgggaccgtcaagtacaagtggcaaaatttgttaaa
tcgaagatgatcaaacataaggacttgaagcttgatagtgccgccgttggtgttgcctgg
ttaaatgatcagatgttagctgtccttaacttgagagggcagctctgtttgttctcaaaa
gatggcactgagcttcgcaggactatctttattcttgatggtttggtcttcgatgacagc
atattgtaccatacccatttttctaacaggtttggtaaccctgagagggattttaacaac
tcagtagcagtaagaggtgctacagtatatattcttggcccaagctttcttacagtttcg
cgacttcttccatggaaagagcggattgaagcactaaagggggctggtgattggataggt
gcaatggacatggcaatgaaactttatggcggtcacacacagggtgttattgattttccg
ggaacagttgattctataagggaagccataatgccgtatctagtagagttgctgctgtca
tatataggttatgtctttgaatatatttcaattgcattatcaaaccgtactaaaaaaggg
ggagcagcagatggcctgatagactcagatagatccctcctgacagagagagaagaacaa
tatgcccgtgtaggaggggttgcagtcgagttttgtgttcacattggacgaaatgacatc
ctgttcgatacagtcttttctaagtttgttgctgctcaaagtggaggtatgtttctggag
gtactggagccatatatattgaaagatatgcttggttctttaccccctgagatcgtgcaa
gctctagtagagcattatagtggcaaaggatggttgcagcgagtcgaacaatgcattctt
catatggatatttcatcactggattttaatcaggtagtcagactgtgtcgtgagcatggg
ttatatggtgctctagtttatttatttaaccaaggcttgaatgatttccgtacacctcta
gaggaacttctatctgttatccagaacactactagaaaagatgctacttgctacagaatg
cttgtttatctgaagtattgcttccagggcctagcatttcctccagggcatggaataatt
ccccgagcccagcttcattcagtgagaaaagaacttctgcaattcatgcttgaagagtct
aaaatgcacacttctgaagtatttaagggtttcagctattcttctggaaaatgcccaaac
atatgctatctactatggatggatacggaagctactctggaagttgtcaagtgtgctttt
gcacaagagaattttgaacctacttctagtactgctgatacacctgtgtccaaggatgaa
gatgatactaatattgaaagcccagatagtcaaaatatcttgttacaaagtttagttgac
accatcattcatattgttggtttagaaaatgaggcaatccattctattttcgtgggtatc
gctgagtcagaagaatcaaaactttggccttcagtgaatgattttggctatataattgaa
tttctgtccttttttatttccagtagaagggcaaagtcatctcaaagagttcttaagcac
attcttaaatacttcatgtcatgcaatactccatcacatgatgataaaaagatgctaact
cagaaagtagttcttcagctcttcaatgtggttcctcaaactgactggaattctgattat
gtgttgcatctttgtttagatgcccattttcatcaggcatgtggcaggatatatacagcc
agaaatcaaaatttgtccgccttagatagttacatgaaggatatagtggaaccataccaa
gcttttatcttcatcagcaaaaagttatttcagttggcaggtgatgaagctttgtcattt
cgttccacagtaatatctcgttttgccgagctagtcaatctaagcagggagtgcgcattt
atcttgttccttgatcattttcaaaatgagatccagcaaatattgtcaaagcttcgttct
gccaagcgcagccactttcttttcttgaaaactgcaatggaagtacacttgtcaggcaaa
cttgacttcagcacactaactgccaggaactgtgaaattgttgaacgtcggtacttctct
ggtgaactcgaagattatctgcagagattatcaaattccccaaagttgtttgaacacaat
cttgtttctatgattgatgagttatttgagccttatccgaagcttctgtgtcagtatgaa
ccaaggtcagtcctgaagtttctagagacttttggtagctacaaattgggcgagtgtttg
cagttttgtctagattatggagttacagatgctgctgcatttctgcaagagggggctggt
gatgctttgagtgcgctggcacttgttctagctggactagatgagaaaattagccagttt
atcacttcagtggaagattcgttttctcagatatcctcgaagagtatctctgaaattgag
caaccagccattgttttaaaaatgagtgaggctcatccggtgcttgatgcgttacgttcc
tccattggattgtgccaaaggaattcagagtgctcaggcccagagaagtctcaattactt
tggtttcaactgcttgactctttctcagaaccactgaaaaagttgtatggaagcaaggat
gtaaatggaaaaggttgttggtctgagcgggaggaaacaacgaatggatatccaacaggc
aaaggattctcacaacagatgttgatttcagcttatcaaaggtgtttgaatactctgcgg
agagtattctcgcaattcgttggggagataatcgaggcaatggctgggtatatacccctc
ccagaaattatgtcaaagcttttatctgacaatgggagtcaagaatttggtgattttaaa
cttgtcatacatagaatgctgtctatgtatcttcatcaaaaaagaatactggaaacagcc
aagtcacttatcgaggatgattcattctataccttgagttcattaaagagaggggtttgt
catggatttgctccacatacttttgtctgttgtgtatgcaacttctcactttccaaagaa
ggtgctatttcagcagttcgagtgttcagttgtggacatgcaacccatcttcactgtgag
tctgaacaaagcaaatcatccattaaggattttcaagacggatgtccagtttgtctctcg
acgagtgacacgcaatcctggaacagatcacctataatatctgagaatgggttacctagg
taccccgtggttgaaaatgaagtaccatacggcgtccatcataatcacgagacagatcat
gttgagagatctcgtgggcttcagcagatgccacggtttgaaatactgaaaagtctccag
aaagctcagaagtcttcatatttgaactgtgcctccgttgaaactttttccgccagccat
atatcatga
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