Hordeum vulgare subsp. vulgare (domesticated barley): 123411396
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Entry
123411396 CDS
T11213
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123411396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123411396
03041 Spliceosome [BR:
hvg03041
]
123411396
03032 DNA replication proteins [BR:
hvg03032
]
123411396
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
123411396
Spliceosome [BR:
hvg03041
]
Complex A
U1 snRNP components
Sm proteins
123411396
U2 snRNP components
123411396
Complex B
U1 snRNP components
123411396
U4/U6.U5 tri-snRNP components
123411396
Complex C
U2 snRNP components
123411396
DNA replication proteins [BR:
hvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
123411396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
123411396
NCBI-ProteinID:
XP_044960269
UniProt:
F2E7D5
LinkDB
All DBs
Position
7H:complement(605165383..605167727)
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AA seq
87 aa
AA seq
DB search
MATVPVNPKPFLQNLTGKMVIVKLKWGMEYKGYLVSVDSYMNLQLSGTEEFIDGQCSGNL
GDILIRCNNVMYLRGVPEVDTEIPDAA
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgtgccagttaaccccaagccattcttacaaaacttaacagggaagatggtc
atcgtcaagctgaaatggggcatggagtacaaaggttatcttgtttcagtggactcctac
atgaatctgcagctaagtggtaccgaggaattcattgatggacaatgctctggaaatttg
ggagacatactgataagatgcaacaatgtgatgtacctccgaggtgttccagaggtggac
acggagattccagatgcggcctga
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