Hordeum vulgare subsp. vulgare (domesticated barley): 123412041
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Entry
123412041 CDS
T11213
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123412041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123412041
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123412041
mRNA degradation factors
5'-3' decay
Decapping complex
123412041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
DUF445
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Retrotran_gag_4
Motif
Other DBs
NCBI-GeneID:
123412041
NCBI-ProteinID:
XP_044960933
UniProt:
A0A8I6YLC9
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Position
7H:136478163..136486174
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AA seq
1308 aa
AA seq
DB search
MASPSGNPNPNPSAPFELSRLFKPPPNPNHPTTVPTPTGIFPGAPPGAPMAAGPPGPYSY
PPATPPFHRNQYLHYPTDPNAAHLPVAAFANPNPTANPLPNPGPGPNPGARLMQLLGNTA
PAHLESVASMPPTSSEFSGGPVAPLPGMPSAPPARMTSTSSKMPRGRLLGPGDRAVHDVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEENKPQITGKIEMAIQIVGD
AGTYHPRICWHSHKQEILFVGIGNCVLKIDTTKVGIGRDFSKEEPLKCSLDKLIDGVHLV
GKHDGDVTDLSLSQWMTTRLASASKDGTVKIWDDRRTVPLSVMKPHDGKAVYSVSFLTAP
EQPNHINLVTAGPLNREVKIWASSDKEGWLLPSESETWRCTQTLELVSSLENRFEEAFFN
QVAVLPQASLILLANAKKNAIYAIHVEYGPDPASTHLDYIADFTVAMPILSLTGTHESQP
DGEHVVQVYCVQTMAIQQYGLELSLCLPPTADNTGVGRDLAISHVYERPLEVASVESSTE
TKPLSDRQGTEADTATHVSSPTPTSNMDNAGSYAEAVLRRDASRGPSLGDHDGDKSSFDY
SKKMMDSDVTSGQGAFDRKDSFGNEEPRGGQVDGTVSDPHPTFKVGVNATHLITPSEIIS
GVLPSAESTANGSPPNVEMESKLVVEKKTDQNVGFEDVKETQIVQEKMERLNMSSEQTVE
AISERSVTTDKYSVEDSQRSDPTLLKQHSGAGDENLPRRTAEATEKINGSSSRNLQLPSA
TKEEKVLHPQLSGQMSPLTRTFNSTDSSHEHPSSTNPAIDSVPQVAAIQGTLQQLMAMHT
DMQKQLNAIVSAPIAKEGKRIETSLGRNIEKSIKANVDAMWARFQEENARHEKVERERMQ
QIATLITTSVNKDIPAMLEKSLKREISLLGPTIARTTTPIIEKSLSSAVSDSLQKVLGEK
VVNQLDKSVSTKLEATVAKQIQTQFHSTAKQALQDALRSSFESSIIPAFDQSCKTMFEQV
DGAFQKGMSEHGTAIQQQVAAAHSPLAQTLRETITSASSITQGLTSELLDGQRKLLALVA
SGNPISHNTSALQPISGPIPNLPEADVPLDPMKELTRLISEQKFDEAFTMALQRSDVSMV
SWLCSQVDLQGLCRLNPVPLNQGVLLALFQQLACDIGNDTPLKLQWMTAVAMAIQPTHQM
ISAHVRPIFEQVYGVLARQQSVPGTSPLEASNIRLMMHVINSVMMTHK
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaccctcgggaaaccctaaccccaaccccagcgcccctttcgagctcagcagg
ctcttcaagcctcccccaaaccctaaccaccccacaaccgtcccgacccccaccggcatc
ttcccgggcgccccgcccggcgcgccgatggccgccgggccgccgggcccatactcctac
ccgcccgccaccccgcccttccaccgcaaccagtacctccactaccctaccgatcccaac
gccgcccacctccctgtcgccgccttcgcgaaccctaaccccaccgcaaaccctctccct
aaccccggccccggccccaacccgggagctcggctcatgcagttgctgggcaacaccgcg
cccgcccacctcgagtccgtggcgtccatgccgcccacgtcatcggagttctctggcggc
ccggtggcgccgctgccagggatgccgtccgcgccgccggcgaggatgacaagcacgagc
agcaagatgccccggggcaggctgctggggccgggggacagggccgtgcacgatgtcgat
tcgcggctgccaggggaggcgcagccaccgcagctggaagtgactcccatcaccaagtac
acctcggaccctgggttggtgctgggccggcagatcgctgtaaaccggacgtacatcgtg
tacggcctcaagcttggcaacatccgcgtgctcaacatcaacaccgcactacgctcgctc
cttcgtgggcacacacagagggtgacggacatggctttctttgcagaagatgtccatcgt
ttagcaagtgcaagcgtagatgggcgtatatatgtatggaagattgacgagggacccgat
gaggaaaataaaccacaaatcacaggaaagattgaaatggccatccagatagtaggagat
gctggaacttaccatccaagaatatgttggcactcccataagcaagaaattctgtttgtt
ggaatagggaactgtgtcttgaaaatagacacaacaaaagtgggaataggaagagacttc
agtaaagaagagcctcttaaatgctcacttgataagctcattgatggtgtgcacttggtt
ggtaaacatgatggggatgtcacagatctgtccttatctcaatggatgactacccgtctg
gcttcagcatcaaaagatggcacggtaaaaatctgggatgatcgcaggacagtgccttta
tctgtgatgaaaccgcatgatggtaaagctgtttattcggtttctttccttacagcacca
gagcaaccaaatcatataaatcttgttacagcggggcctctcaaccgagaagtaaaaatc
tgggcttcctctgataaggaaggttggttgttgccaagtgaatctgagacttggagatgc
actcaaactctggaacttgtgagttctctggaaaataggtttgaggaagcatttttcaac
caagtagcagtgttgccacaagctagccttattttgcttgcgaatgcgaaaaagaatgct
atatatgctatccatgttgagtatggtccagatcctgcttctactcatctggactatata
gcagatttcacagttgcaatgcctattttaagtctgacgggaacacatgaaagccagcct
gatggtgaacatgtagtacaagtctattgtgtccagacaatggctatccagcagtatgga
ttggagttatcactctgtttgcctcctacagctgataacactggggttggtagggatctg
gctatttcccatgtatatgagagacctctagaagtggcatcagtggagtcatcaacagaa
actaaaccactgagtgatcgtcagggaacagaagctgatactgctactcatgtttcgtcc
ccaactcctacatcaaacatggataatgctggatcttatgcagaagctgtcttgagaaga
gatgcttcaagaggtccatctcttggtgatcatgatggggacaagtcatcttttgattat
tcaaagaaaatgatggattctgatgttacgagtgggcaaggggcatttgataggaaggat
agctttgggaatgaagagccaagaggtggccaggttgatggtacagtttcagatcctcat
cccacgtttaaggtcggagtgaatgccacacacttgattaccccatctgaaattatttca
ggtgtgcttccatctgctgaatcgactgctaatggcagcccaccgaacgtagaaatggag
tcaaaacttgtggttgagaaaaaaacagatcaaaatgttggatttgaggatgttaaggag
acccaaattgttcaagagaaaatggagaggcttaacatgtcttcagagcaaactgtggag
gcaattagtgaacgctcggtaacaactgacaagtacagcgtggaagattcacagagatca
gatcccacacttttgaaacaacattctggtgctggggatgaaaatcttccaagaagaaca
gctgaagctactgaaaaaatcaatggctcttcttcaaggaacttgcagttaccctcagct
accaaagaggagaaagttctgcatcctcagctgtctgggcagatgtctcctcttacacgc
actttcaactctactgattcatcacatgaacatccaagcagtacaaaccctgctattgat
tctgtcccgcaagtagctgctattcaaggaacattgcagcagcttatggcaatgcatact
gacatgcaaaagcagctgaacgcaattgtgtctgctcctattgcaaaggagggcaaaagg
atcgagacatcactcgggcgtaatattgagaagtccataaaggctaacgttgatgccatg
tgggctcgtttccaggaggaaaatgcaaggcatgaaaaggttgaaagagagcgaatgcag
cagattgctactctaataacaacatctgtaaacaaggacattcctgctatgctggagaaa
tcgttaaagagagaaatatcgttgttggggcccaccattgcacgaacaacaacacctatc
attgagaagtccttgtcttctgctgtttcggattcacttcagaaagttcttggggaaaag
gttgtgaatcagctggataagtccgtaagtacgaaacttgaagctacagttgctaagcag
atccaaacacagttccattcaactgccaagcaggcacttcaggatgctttacggtcaagc
tttgagtcatcaattatcccagcatttgatcagtcttgtaagacaatgtttgagcaagtg
gatggtgcattccagaagggcatgtctgagcatggtactgctatccagcagcaggtcgca
gcagcacatagtccattggcacagactctaagggaaacaatcacttcagcgtcatcaatt
acccagggtcttacatcggagttacttgatggccagcgcaagcttttggcactagttgca
tcagggaacccaatatcacataatactagtgctttgcagcccatcagtggaccaatacct
aatctccccgaggctgatgttccgctggacccgatgaaggagctaaccagactaatatct
gagcaaaaattcgatgaggcgtttacaatggcacttcaaagaagtgatgtctccatggtg
tcttggttgtgctctcaggttgatttgcaaggattatgtagactgaaccctgttcctctg
aaccaaggggtccttctggcccttttccagcaactggcatgcgacataggcaacgacaca
cccctgaagcttcaatggatgacagcggtcgccatggcaatccaaccaacccatcagatg
atctcagcgcatgtgaggccaatatttgagcaagtctatggtgtcttggcccgccaacag
tcggtaccaggaaccagcccactggaagcgagcaacatccgcctaatgatgcacgtaatc
aactcggttatgatgacccacaaataa
DBGET
integrated database retrieval system
