Hordeum vulgare subsp. vulgare (domesticated barley): 123412777
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Entry
123412777 CDS
T11213
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123412777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123412777
03041 Spliceosome [BR:
hvg03041
]
123412777
03009 Ribosome biogenesis [BR:
hvg03009
]
123412777
03016 Transfer RNA biogenesis [BR:
hvg03016
]
123412777
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123412777
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123412777
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123412777
Complex C
U4/U6.U5 tri-SnRNP related factors
123412777
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
123412777
Transfer RNA biogenesis [BR:
hvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123412777
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123412777
NCBI-ProteinID:
XP_044961647
LinkDB
All DBs
Position
7H:3039309..3046043
Genome browser
AA seq
995 aa
AA seq
DB search
MEATLKRKATEDAPAAGVDPPIKPPRADADAAPAGTERVACVHDVSYPEGYDASAPGPRI
VAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQ
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEV
MREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQ
PCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPASGNDKKREN
GKRQKGVVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDD
EKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGL
IKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRGVC
ILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLRSEDGDPEKLLRHSFYQFQAD
RALPDLEKQVRELEVERSSMVIEDEESVKDYYDLLQQYRTLKQDVRDIVLSPKYVLPFLQ
SGRLVRVQYTTDESTFSIDESVSWGIIINFEKVKTNAEERKPEDCDYTVDVLTRCSVIKD
VNGKKAMKVIPLKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKIEEVLS
RFAKDGVPLLDPEEDMEVKSSSYRKATRRIEALESLFEKHDIRNAPHIQQKLKVLHAKQE
IKAKIKSIKKTMQASTSLAFKDELKARKRVLRRLGYITNEDVVEIKGKVACEISSADELT
LTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVANLQL
ECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQQL
ILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccctcaagcgcaaggcgacggaggacgcccccgccgccggggtcgacccc
cctatcaagccgccgcgcgcggacgccgacgccgcgccggccggcaccgagcgcgtcgcc
tgcgtgcacgacgtctcctatcccgagggctacgacgcgtccgcccccggcccgcgcatc
gtcgccggcggcggcgagggcgcagcccctgccaagacgttcccgttcccgctcgacccc
ttccagtccgaggccatccgctgcctcgacaacggcgagtccgtcatggtatcggcgcac
acgtcggcggggaagacggtggtggcgctgtacgcgatagccatgtccctgcgcaaccag
cagcgggtcatctacacgtcccccatcaaggccctcagcaaccagaagtacagggagttc
aaggaggagttctccgatgtaggcctcatgaccggggatgtcaccatcgagccaaacgcc
tcttgcttggtcatgaccacggagatttggcgcagcatgcagtacaaggggtccgaggtg
atgagggaagtcgcttgggttatcttcgatgaggtgcattacatgcgcgacagggagagg
ggagttgtgtgggaggagagtattgtgatggcgcccaaaaactcgcggttcgtgttcctc
tcggcaacggtacctaatgccaaggagtttgctgattgggttgccaaggtacataagcaa
ccttgtcatatagtatacaccgactatcgacctacacctctccagcactatgtatttcct
gctggaggtgatggcttatacctggtcgttgatgaaaatggcaagttcagagaggacagt
tttcagaaatctctgaatgtccttgcccctgctagtggcaatgacaagaagagggaaaac
ggtaagcggcaaaaaggcgttgtctcggcaggcaaaactaatgaagaaagcgacatattc
aagatggtgaaaatgataattcagcgtcaatatgaccctgtgatacttttcagcttcagc
aaaagagagtgtgaatttcttgccatgcagatggccaagatggacttgaatggggatgat
gagaaagtgaacattgaaaccattttttggagtgccatggatttgctttcagacgatgac
aaaaagcttccccaggtttcgaatatgcttcccttattgaaacgcggcattggagtgcat
cattctggtctgttgcccattttaaaggaagtgattgagatacttttccaagagggcctc
atcaagtgtctgtttgccacagagacattcagtattggattgaacatgcctgcaaagact
gttgtgtttaccaatgtacgtaagtttgacggagatcgattcagatggttgtcaagtgga
gagtacattcagatgagcggccgtgctggtcgtcgaggtattgatcagcgtggtgtctgc
atattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaaggaggt
gctgatagtttgaacagtgcctttcatttgagctacaacatgttgctgaatcaactacgc
tctgaggatggtgatccagaaaagcttcttcggcattcattctaccaatttcaagcagat
agagctctccctgatcttgagaagcaagtcagggaactggaagtagaaagaagttccatg
gttattgaagacgaggagagcgtgaaggactattatgatctcttacagcagtacagaact
ttaaagcaggatgtccgtgatattgtactttcgccaaaatatgttctgcctttcttgcaa
tctggaaggcttgttcgtgttcaatacactacagatgagtccaccttctctattgacgaa
agtgtgtcatggggaattataataaattttgaaaaggtgaaaaccaatgctgaagaaaga
aagcccgaggattgtgattacactgttgatgtcctcaccagatgttctgtaattaaggac
gtaaatggaaagaaggcaatgaaggttattcctctcaaatcccgtggagaaccggttgtt
atttcattgccactttctcagattgatggactaagcagtgtccggatgtacatacccaag
gatcttttgcctgtagaagctcgagaaaacaccttgaggaaaattgaagaagtgctttca
aggtttgctaaagatggggttcctttattggatccagaagaagatatggaagtaaagtct
agctcctaccggaaagctaccagaagaatagaggctctggagagcttatttgagaagcat
gacatccgtaatgcaccccatatccaacagaagctgaaggtcttgcatgctaagcaagaa
ataaaagccaaaataaagtccataaagaaaacaatgcaggcctcgacttctctagccttt
aaggacgagctcaaggcacgaaaacgagttcttcgtaggctgggatacatcaccaatgag
gatgtagttgaaataaagggcaaagtagcatgtgagatcagctcagccgacgaactgaca
ttgacggagcttatgttcagtggtactttgaaggatgctactgtggagcagatggtggct
ctgctttcttgctttgtttggcaggaaaagcttcaggacgccccaaagccaagggaggag
ctcgacctgctcttctaccagctgcaagagacggcacgaagggtcgcgaacctccagctt
gaatgcaagatccagatcgatgttgagagtttcgtgaactccttccgccctgatgtgatg
gaggccgtgtactcgtgggccagagggtccaagttccaccagatcatggagatgacacag
gtgtttgaaggcagcctgatcagggccatcaggcggctggaggaggtcctacagcagctg
attctggcgtcccagtcgatcggtgagacccagcttgaggccaagctcgaggaggcggtc
agcaagattaagagggacattgtgttcgctgcgtccctgtacttgtga
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