KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123412985
Entry
123412985         CDS       T11213                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123412985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hvg03021]
    123412985
Enzymes [BR:hvg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123412985
Transcription machinery [BR:hvg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123412985
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 BAF250_C
Other DBs
NCBI-GeneID: 123412985
NCBI-ProteinID: XP_044961868
LinkDB
Position
7H:434755023..434764579
AA seq 1225 aa
MEEPETNLGQQSPNGPDTEIDVTDFMVLDCDEEGKFYVKQDAKGEQQPFGGLSPMDVGLK
GIPSVVDEGKVKSSSDPSAQVPIDFNSASLEKFCKEAARSFFTEKGLISHQINSYNDFIS
HELQELFDSLGEITVEPDYDPSKRVGDWRHAAVKFGRVELEKPMFWADNSDLDEQKLTLK
PVHARLQKMTYSSKINIEMTVQVYTLNESDKSKTGKDPYIHKKLISSPETKWVTIGRLPV
MVKSNLCWLYELQETECQFDYGGYFLIKGTEKAFIAEEGRCLSRIWVTDSPSWVASYLSQ
IKREKIYLKLVPSKENDGFHKVINMSFLGATMPIWIMFFALGVSSDKEAFDMIDIQDCDA
SLLNILSATIRQSDEQCEGFRGGGRARQYVDEYIRKTKLPPKESFDGYVGKYLFPGVSDN
RCKALFLGYMMKCLLMAYCGRRKCDNKDDFRNKRLDLACQLLRRELWVHLVHATRRMAMV
MQRHLSGDGDLQVLDHYVDASVITNGLNRAFSTGSWCHPHKYGRCSGIVATLRRTNPLQM
MSDMRKTRQLSAYWGSAGDARYPNPSYWGKLCFMSTPDGEKCGFVKNLAASAVVSSVMRK
PLIDLFVSCGMKKLDEVLVQEIGGTEKIFLNGDLVGVSAQPGEFVTNLRNMRRSKQIDPQ
VEIKRDKLDKEVRVFSDAGRILRPLLLVENLKSIAKPNGGSYSFQQLMDQNIIELIGAEE
EEDIQCACGIKDLFSGDKKEGLLYYSHCELDPSFLLGLSCGIIPFVNHNSAKRVLMQAEK
LSQQAIGYSPTNSQYRVDTLFHQMYYPQSPLFKTVLSDCLGKRGLTRPEYFNGQNAIVSV
NVHQGFNQEDSLVFNRASLERGMFRTLHFKSYKAQIENKEVTRRLKHREKTEFGKTQSKK
GRVDSLDIDGLPYVGASLQSGDIVIGKVSESGEDRSMKLMHTEKGMVEKVILSANDDGNN
SAVVTLRQVRQPCVGDKFASMHGQKGVIGLLDSQENFPFTCQGIVPDIVINPHGFPTRQT
PGQLLEAAFGKGIALGGTSRFATPFTTPSVDVITEQLHKAGFSRWGGESVLNGQNGERTK
SLVFMGPTYYQRLTHMAEDKVKFRNTGPVHPLTRQPVVDRKRFGGVKFGEMERDCLLAHG
ATANLHERLFTLSDLSQLHICQVCERVANVVLRPAERGRKVHGPYCGFCKSTENILRIKV
PYGAKLLYQELFSMGICLKFETEAS
NT seq 3678 nt   +upstreamnt  +downstreamnt
atggaagagccggaaacgaacctcggtcagcagtcaccaaatggaccagatactgagatc
gatgtcacggatttcatggttttggattgcgatgaggaaggcaagttttatgtaaaacag
gatgcaaaaggggagcagcaaccatttggagggctctctcctatggatgtgggtttgaaa
ggaataccttctgtggtagatgaagggaaagtgaagtcttcttcagacccaagtgcgcaa
gtaccaatcgacttcaatagtgcaagcctggagaagttctgtaaagaagcagcacgatcc
ttcttcactgaaaaagggctgatcagccatcagataaactcctacaatgattttatctcc
catgagctacaagagctctttgactctctaggggaaataactgtcgaacctgattatgat
ccttcaaagagagtaggtgactggagacatgcagctgtcaagtttggcagagtggagctt
gagaagcccatgttttgggctgacaacagtgacctcgatgagcagaaactcacactgaag
cctgtacacgctcgccttcagaaaatgacatattcttctaagattaatatagaaatgact
gttcaggtttatacactcaacgaaagcgacaaatcaaaaaccgggaaggatccatatatc
cataagaaacttatatcgtcgccagaaactaaatgggtcaccattggcaggttgcctgtc
atggtgaagtcaaatttgtgctggctgtatgaacttcaggaaaccgaatgccagtttgat
tatggtggatactttctgatcaagggaacggaaaaggcatttattgctgaagaagggaga
tgcttatccaggatttgggtcactgactccccgagttgggttgcttcttacttgtctcaa
atcaaacgagaaaagatctatcttaaacttgttccatctaaagagaatgatggtttccat
aaagtcattaacatgtccttcttgggtgcgactatgccaatatggataatgttttttgca
ctaggtgtatcatcagataaggaagcttttgatatgatcgacatacaagattgtgatgct
tctttgctcaacatattatcagcaactataagacaatctgatgaacaatgtgaaggcttc
cgcggaggaggtagagcccgtcaatatgttgatgagtatatcagaaaaacgaagcttccg
ccaaaagaatccttcgatgggtatgttggtaagtatctgtttcctggtgtcagtgacaat
aggtgcaaagcacttttcttgggttacatgatgaaatgcctgctaatggcctactgtggc
cgccggaaatgtgataataaggatgatttccgtaacaagaggctagatctagcatgtcag
ctgcttcgtagagaactttgggtgcatcttgtgcatgcaacgagacgcatggccatggta
atgcagaggcatttgagtggtgatggtgacttacaagttctcgatcattatgttgatgcc
tcagttattaccaatggtctgaaccgtgccttctccactggttcctggtgccacccacat
aaatatggaaggtgctcagggattgttgcaacccttagaagaacaaatccgcttcaaatg
atgtcggacatgaggaagacaagacaattgtctgcatactggggaagtgctggagatgct
agatatccgaatccctcctactggggtaaattgtgtttcatgtccactcctgatggtgaa
aaatgtggatttgtgaagaacctagctgccagtgctgtggttagctctgtgatgaggaag
cctttgattgacttatttgtgtcctgcggtatgaagaaactagatgaagttcttgtacaa
gagattggcggtacagaaaagatcttcttgaatggagatttggttggtgtgagtgcacag
ccaggcgaatttgttacgaatctaagaaatatgagacgcagcaagcaaattgatccacag
gtggaaatcaaaagggacaagctagataaagaagttcgtgtcttttctgatgcggggaga
attctaaggccacttcttttagttgaaaatcttaaaagcatcgctaaaccgaacggtgga
tcatactcatttcagcaacttatggaccaaaatataattgaactgattggtgctgaagag
gaggaggatatccaatgtgcttgtggaattaaggatctcttttcaggggacaaaaaagag
ggtcttttgtactatagccattgtgaactcgacccttctttcttgctagggttgagctgt
ggtatcattccctttgtcaaccataattctgctaagagagttttgatgcaagctgaaaaa
ctatcacaacaggctattggctactcacctacaaattctcagtatagagttgataccctt
tttcatcaaatgtactatccacagagtcccctgttcaaaactgtattatctgactgtctt
ggtaagagaggccttactagaccagagtatttcaatggccaaaatgcaatagtttcagtc
aatgttcatcagggatttaaccaagaagactccctggtatttaatagggcttcgttagag
cgtggcatgttccggacacttcatttcaagagctacaaagcacagatagaaaacaaagag
gtgaccagaagactcaaacacagggaaaaaactgaatttggaaaaacccaaagcaagaaa
ggacgtgttgacagtctcgatatcgatggattaccatatgttggagcgagtcttcaaagt
ggcgacattgtcattgggaaggtctcagagtctggtgaagatcgtagtatgaagcttatg
catactgaaaaagggatggtggagaaggttattctttcagctaatgatgatgggaataac
tctgcagttgttactctaagacaggttcgccaaccttgtgttggagacaagttcgccagc
atgcatggccagaaaggagttattggtcttttggattctcaggagaactttccatttact
tgccaaggaatagttccagatattgtgataaatccacatggcttcccaactcgccagact
cctggtcagctcctcgaggctgcatttggcaagggaatagctcttggtgggacgtccaga
tttgcaacgccatttaccactccatctgtggacgtgatcacggagcaattacacaaagct
ggtttttcaaggtggggaggtgagagcgttctaaatggccagaatggtgagagaacgaaa
tccttggtgttcatggggccaacctactaccagaggctgactcacatggccgaggacaag
gtgaagttccgcaacaccgggccggtgcacccgctcacgaggcagccagtggtggacagg
aagaggttcggcggtgtcaagttcggggagatggagcgcgactgcctcctcgctcatggc
gccaccgccaacctccacgagcggctcttcacgctcagcgacttgtcgcagctgcacatc
tgccaggtgtgcgaacgggtggcgaacgtggtcctgaggccggcggaacgggggaggaag
gtccatggcccctactgcggcttctgcaagtcgacggagaacatactccggatcaaggtg
ccttacggcgcaaagctgctctaccaggagctcttcagcatggggatctgcctcaagttc
gagaccgaggccagttag

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