Hordeum vulgare subsp. vulgare (domesticated barley): 123413186
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Entry
123413186 CDS
T11213
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123413186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123413186
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
123413186
Prokaryotic type
Archaeal type
TFB
123413186
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Zn_ribbon_tTFIIB
Ribosomal_S27e
Zn_ribbon_PaaD
DUF7573
Zn_ribbon_9
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
123413186
NCBI-ProteinID:
XP_044962074
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All DBs
Position
1H:complement(439622943..439623956)
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AA seq
316 aa
AA seq
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MYTSTSSAADERVYCPECHRATEVVLDHATGDTICTECALVLDAHYIDECSEWRNFADDG
GGDDRDPSRVGASGDPFLNAKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTL
VDGFRGIADMADRLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGM
PRTYKELASVTAGGAESKKDIGKMTTHIKRLLGEEDGQVMDIGVVSASDYLRRFCSRLGL
GNQEVRDAQEAVRKVEEGLDVRRNPESVAAAIIYMVVQRAGAGRSVKDVSVATGVAEGTI
KEAHKDLSPHAQMLFG
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccagcaccagctctgctgccgacgagcgagtgtactgcccggagtgccaccgc
gcgacggaggttgtgctcgaccacgccaccggcgacacaatctgcaccgagtgcgcgctc
gttctcgacgcgcactacatcgacgagtgttccgagtggcgcaacttcgcggacgacggc
ggcggcgacgaccgcgaccccagccgcgtcggcgcgtccggagaccccttcctcaacgct
aaactctccacggtcattgtctactccaacaagtcctccgccaccggcgtgggggccaac
gccctgccgaggatgtcggtgcgcgatgccgacgctagcgcggcgtccgaaaacaccctc
gtcgacggcttccgcggcatcgctgacatggccgaccggcttggactcgtggccacgatc
cgggacctggccaaggagacgttcaagaagctgtacgatgccaagggctcccctcgcggc
cggaagcgggacgccgtctacgctgcctgcctctacatcgcctgccgcaacctcggcatg
ccacgcacgtacaaggagctcgcctccgtcaccgctgggggcgcggaatcgaagaaggac
attggcaagatgacgacgcacatcaagaggctccttggggaggaggacggccaggtgatg
gacatcggcgtcgtgagcgcctccgactacctgcgccgcttctgctcccggctcggcctg
ggaaaccaggaggtgcgcgacgcgcaggaggcagtgcggaaggtcgaggaaggcctcgac
gtgcgccgcaacccggagtctgtcgccgcagccatcatctacatggttgtgcagcgtgcc
ggcgccggcaggtccgtcaaggacgtgtccgtggccaccggcgtcgccgagggcaccatc
aaggaggcgcacaaagacctcagtccgcacgcccagatgctcttcggctga
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