Hordeum vulgare subsp. vulgare (domesticated barley): 123413441
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Entry
123413441 CDS
T11213
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123413441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123413441
03041 Spliceosome [BR:
hvg03041
]
123413441
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123413441
Spliceosome [BR:
hvg03041
]
Complex B
Other components
Prp19-related factors
123413441
Complex C
123413441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_16
Mad3_BUB1_I
PPR
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
123413441
NCBI-ProteinID:
XP_044962310
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All DBs
Position
7H:complement(99216957..99219334)
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AA seq
771 aa
AA seq
DB search
MEIEVSADDVVYEEDVLRDPFRLSGWLRYLSGRVAAPPAKRAAIYERALRALPGSYKLWH
AYLTELGDAARALPVTHAAHAGLNATFERALAAGMSRMPRLWHMYASSLLQQRLLTRARR
VLDRALRSLPVTQHHRVWPLHLRLASLPDCPAPTALRMHGRHLQFDPDHAEEFIAFLVSA
GRWRDAAHHLATAIDDEGFVSVKGRTKRELLLDLCGLLAQHPEEVAGMPVDAILRGSIRK
FPEEASMLWTCLASHYARRGLHGKARDVFEEATTTATTVKDFRMVFDAYLHFEHAMAAAE
LELGQADTVDVQDCWLADRDSTDLTMARLERLLERRPELLNSVLLRQNPHDVQAWHERAK
IFHKDPARHAATYVEAVKTVDPAKATGKPPHTLWLALTKMYEDRGSADCARDVLHRATQA
NFTAAEHLAAVYCEWANMELKHQNPETAIDLIRQATMPPSIEATMRTAAAGGEDVRAKLH
RCLKLWLVYLDLMTTHGSLESTCAVYDKMHDLGVITPLLVLDHATLLEQHRRFEDAFRVY
ERGVRSFKHPHADAIWEAYLTKFVQRHGESRPERVRDLFQAAVLQAPPGRKKAVYLRYAR
FEEDFGLASRAMKVYEDAASAVPADDKLCVYEVYIARATELCGLLKARDVYRQAVVGGGL
PDEGARAMCVGFADLEIGLGEVARARALYVHAASFTDPEVCPEFWKRWNDFEVLNGDEST
FREMLRAKRTMAAVARDGAGTRRAIGTDGRLVECAGQRLDCAQQCKRIRLA
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcgtgtacgaggaggacgtcctgcgtgatccc
ttcaggctgtccggctggctacgctacctgtccggtcgcgtcgcggcgccgccggcgaag
cgcgcggccatctacgagcgggcgctgcgggccctcccgggatcctacaagctctggcac
gcctacctcacggagctcggcgatgccgcgcgcgccctgcccgtcacccacgctgcccac
gccggcctcaacgccactttcgagcgcgctctcgccgccggtatgtcccggatgccgcgt
ctctggcacatgtacgcctcgtcgctcctccaacagcgcctcctcacccgcgcccggcgc
gtgctcgaccgcgcgctgcgctcgctgcccgtcacgcagcaccaccgcgtgtggccgctc
cacctccgcctcgcctccctccccgactgcccggccccgaccgccctacgcatgcacggc
cggcatctacagttcgatcccgatcacgccgaggagttcatcgccttcctcgtctccgcc
ggcagatggcgggacgctgcccaccacctcgccacggccatcgacgacgaaggcttcgtg
tccgtcaagggcaggacgaagcgcgagctcctgcttgacctgtgtggcctgctcgcccag
cacccggaggaggtcgcagggatgccggtggacgccatcctccgcggcagcatccgcaag
ttccccgaggaggccagcatgctgtggacctgtctggccagccactacgcgcggagaggc
ctccacggcaaggcgagggacgtgttcgaggaggccacgaccacggcgaccaccgtcaag
gacttccggatggtgttcgacgcatacttgcacttcgagcacgccatggccgccgcggag
ctcgagctcgggcaagcggacaccgtcgacgtccaggactgctggctggcggatcgggac
agcacagacttgacgatggcgaggctagagcggctgctcgaacgccgtccggagctgctc
aacagcgtgctgctcaggcagaacccgcacgacgtccaggcgtggcacgaaagggccaag
atcttccacaaggatcccgcgaggcacgccgcgacctacgtggaggccgtcaagacagtg
gatccggcgaaggcgacggggaagccgccgcacacgctctggctggcgctgaccaagatg
tacgaggaccgtggcagcgccgactgcgcccgagacgtgctccacagagccacgcaggcg
aacttcacagcggccgagcacctcgccgcggtttactgtgagtgggccaatatggagctg
aagcatcagaatcccgagacggccatcgacctcatccggcaagcaaccatgccaccatcg
atcgaggccacgatgcgcactgctgctgccggcggcgaggacgttcgggcgaaactgcac
cggtgtctcaagctgtggctcgtgtacctggacctgatgacaacacacggatccctcgag
tccacctgcgccgtctacgacaagatgcacgacctcggcgtcatcacgccattgctggtg
ctcgaccacgcgaccctgctggagcagcaccggcggttcgaggacgcgttccgtgtgtac
gagcggggcgtcaggtccttcaagcacccgcacgccgacgccatatgggaggcgtacctg
accaagttcgtccagaggcacggggagagcaggccggagagggtgagggacctgttccag
gcggccgtcctgcaggcgccgccggggaggaagaaggccgtgtacctcagatacgcgagg
ttcgaggaggacttcggcctcgcgagccgcgcgatgaaggtgtacgaggacgccgcgagc
gccgtccccgccgacgacaagctctgtgtctacgaggtgtacatcgcgcgggctaccgag
ctctgcgggctgctgaaggcgagggacgtgtaccgccaggcggtcgtcggcggcgggctg
cccgacgagggcgcgagggcgatgtgcgtcgggttcgccgacctcgagatcgggctcggg
gaagtcgcgcgcgctcgggcgctgtacgtccacgcggcgagcttcacggatcccgaggtt
tgccctgagttttggaagcggtggaacgactttgaggtactgaacggcgacgagagcacg
ttcagggagatgctccgcgcgaagaggaccatggccgccgtggccagagatggagcgggg
acgcggcgtgcgatcggcaccgacggccgcctggttgagtgcgccggccaacgattggac
tgtgctcagcaatgcaagcggatacgtctagcgtag
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