KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123413582
Entry
123413582         CDS       T11213                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    123413582
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hvg03021]
    123413582
   03036 Chromosome and associated proteins [BR:hvg03036]
    123413582
Transcription machinery [BR:hvg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     123413582
   Coactivators
    SAGA/TFTC/STAGA complex
     123413582
Chromosome and associated proteins [BR:hvg03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     123413582
    STAGA complex
     123413582
    TFTC complex
     123413582
    SAGA complex
     123413582
    SLIK complex
     123413582
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Tricorn_2nd Beta-prop_IP5PC_F Beta-prop_WDR35_TULP_N Cytochrom_D1 Beta-prop_ACSF4 RecX_HTH3 Beta-prop_DCAF12 PALB2_WD40 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 123413582
NCBI-ProteinID: XP_044962450
UniProt: A0A287XUX6
LinkDB
Position
7H:complement(611028061..611035079)
AA seq 656 aa
MEDEEMERKVQQYLHRKGFRLTELALQEERNRLSTTSLSDVSLSRPDNDPARYYDGYNKL
RTWAYNSLDQYKHELLRVLYPAFIHCFMDLVSEGHTLEARQFFLKFREDHELMHSRDLQK
LEGTLSPLHLEEMDLARSLRQNKFRIKLCEYSYELLLQYLQKTQALVMLGIINERIIFEV
SAGQPSLISDDADVVALVGTSKDLAKQINQKEVHWGLLEDSVEERMEKALSDSDRAEAES
KDADAEDNNKKKSSEGGKQGGSLNKKLKKDKLVGPTGKNTKSETSMVSAAPRVKPELTLP
ATPVEVEQSILEDLRNRAQLNNLALPSVSFYTFLNTHNGLNCSSISNDGSLVVGGFSDSS
VKVWDMAKIGQPAKTPSSQGENGSSQGEHLSSTSEGKKPYTLFQGHSGPVYSAAFSPFGD
FLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDK
IQPLRIMAGHLADVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLA
MSPDGRYMASGDEDGTIMMWDLSTGRCVSPLAGHNSCVWSLAFSCEGALLASGSADCTVK
LWDVASSTKALKMDDTKAGSTNRLRLLKALPTKSTPVYNLRFSRRNLLFASGALSL
NT seq 1971 nt   +upstreamnt  +downstreamnt
atggaggacgaggagatggagaggaaggtgcagcagtacctgcaccgcaagggcttccgc
ctcaccgagctcgcgctgcaggaggagcgcaaccgcctctccaccacctccctctccgac
gtctcgctctccaggccggataacgacccagcaagatactatgatggctacaataagcta
agaacatgggcatacaattctctcgaccaatacaagcatgaattactccgtgtcctttat
ccagcgtttatccattgcttcatggatcttgtgtcagaggggcatacactagaagctcgg
caatttttccttaaatttcgggaagatcatgaactgatgcattcaagggatctccaaaag
ctggaaggcactctttctcctttgcatttggaggaaatggatctggcccgatctttaagg
caaaataaattcagaattaaattatgtgagtattcgtatgaattacttctccagtatctc
cagaaaacacaagctcttgtgatgcttggaataatcaatgaaaggataatttttgaagta
tctgctgggcagccttcattgatctctgatgatgctgatgttgttgctctggttggaact
agtaaggacttggcaaaacagataaatcagaaggaagtgcattgggggttgcttgaagat
tcagttgaggagcgtatggagaaagcactctcagattctgatagagctgaagcagaaagc
aaggatgcagatgcagaagataataacaagaaaaaatcctcagaaggtggaaagcagggt
ggttctcttaacaaaaagctcaaaaaggataagcttgtaggtccaacagggaaaaatacc
aaatccgaaacaagcatggtttctgcggcacctcgtgtgaaaccggagctaacccttcca
gcaacgcctgttgaagttgaacaatcaattctcgaggacctgcgaaaccgtgcacaattg
aataacttggcattgccttctgttagcttctacacattccttaatacacataatggatta
aactgctcatcaatctcaaacgatggatcattggttgttggtgggttctcagactcatca
gtaaaggtttgggatatggcaaagattggtcaaccagccaaaacacctagttcacaagga
gagaatggatcttcacagggtgaacacttgtcatcaacatctgaggggaaaaaaccttat
acattattccaaggtcattctggaccagtttattccgctgcctttagtccatttggagat
tttctcctgtcatcatcttcagattcaacaattcggctgtggagtaccaagctgaatgcc
aatcttgtttgttacaaaggacacaattacccagtttgggatgtccaatttagtccagtt
ggccattattttgccagtgcctcgcatgacaggactgctcgaatttggtcaatggacaaa
atccaacctttgcggataatggctgggcatcttgctgatgttgattgtgtgcaatggcat
gtaaactgtaactacattgccaccggctccagtgacaaaactgtaaggctatgggacgtt
caaactggtgaatgtatacgaatgtttattggtcataggagtatggtcttatcactggca
atgtctcctgatgggcgatacatggcttctggggatgaagatgggaccatcatgatgtgg
gatctctctactggtcgctgcgtttcaccactggcaggacacaactcttgtgtgtggtca
cttgctttcagctgcgagggagcattgcttgcatcaggatcagctgattgcactgttaaa
ctctgggatgtcgcgtccagcacaaaggctctgaagatggatgacaccaaagctggttcg
acgaaccgactgaggctgctgaaagctctccctacaaaatcgactcctgtttataacttg
cggttttcccggaggaatcttttgtttgcttctggcgctctctcgctatag

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