Hordeum vulgare subsp. vulgare (domesticated barley): 123416662
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Entry
123416662 CDS
T11213
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123416662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123416662
04121 Ubiquitin system [BR:
hvg04121
]
123416662
03036 Chromosome and associated proteins [BR:
hvg03036
]
123416662
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123416662
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
123416662
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123416662
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
123416662
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
123416662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
zf-HC5HC2H
zf-RING_2
BRCT_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-RING_6
zf-C3HC4_4
zf-RING_5
RTT107_BRCT_5
zf-HC5HC2H_2
zf-rbx1
PTCB-BRCT
zf-Nse
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
123416662
NCBI-ProteinID:
XP_044962745
UniProt:
A0A8I6W7K8
LinkDB
All DBs
Position
1H:complement(480961207..480966433)
Genome browser
AA seq
984 aa
AA seq
DB search
MADTASLERMGRELKCPICLSLLRSAVSVTCNHIFCSDCLMESMKSSSSCPVCKVPFRRR
EIRPAPHMDNLVGILKSMEAASGCNVVSTQVTCPAEVADGSKHANSGKKSTGSKKSAVQK
KVSSEKKAKKTKPTVASTSGPTKKPSFSTNKRIHVTPFPESETPMRPRKIMKSVETKDKL
NGDAHEGKDKALASNTVGDLSLSPFFWLREGADEEGGTVETLSEPPSLATPLRHNAPCFS
DIKSSDDGTPPNATPNSKAAVPDVFDSEIFEWSQKPCSPELRSTPRKKQGKFEDMLDHIT
ETNDEEDIQLGGSFDESGHANDAAQPVNAKEMNQNGKKARDGNSRKTKLLKVITKETEAN
QQDSNITKSLAAKSCEKNSSTIDMNTSSRRNKAGNNINLLPCSNNNSMGTFHPQENTLEI
EVHDGHLLKRSQEKENSGQQRKCAKKLGTTGKSAVETTKGNSEPRSKRVRKMPDGDNAEK
IKVIDGSRDETEMPLLHSFMKSCTQHKLFDGRSKKSSKKSKLSEEMNGQIGLDSMKSNIS
ANTSSILLGRCQSSEASFKNKCAKGIKQADSLGMKNFGKLQACTGNTFLKKCDATVSKVF
CAFCQSADITEESGEMVHYHKGKQVPAEFSGGANVIHSHKNCMEWAPDVYFEDDSVFNLT
PELTRSKRIKCACCGVKGAALGCFDKSCRKSFHFTCAKLVPECRWDNENFVMLCPLHQSS
KLPNEVSEPQKQSKRITAPKCPSQVRASQACSNNWTWPSGSPQKWVLCCSALSASEREVV
SEFAKLAGVPISKSWSPSVTHVVASTDPSGACKRTLKFLMAILNGKWIVSIDWVKACMDR
MEPADEQKFEVTTDVHGVREGPKLGRQRAINKQPKLFNGMQFYLHGDYTLSYRGFLQDLV
VAAGGTVLHRRPLSRDQQKLLDDSSPVVVVYSVENQGKAMLDDNDDDRCRQADEAQALAC
ASGGKAASSAWIIDSIAACKLQPL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacggccagcctcgagaggatgggacgggagctcaagtgccccatctgcctg
agcctgctcagatcggcggtatccgtcacctgcaatcacatcttctgcagcgattgcctc
atggagtcgatgaagtcctcctccagctgccccgtgtgcaaggtcccgttccgccgaaga
gaaatacggccagcaccacacatggacaatttggtcggcattttgaaaagcatggaggct
gcatcaggatgtaatgttgtctcaacccaggtgacttgtccggcagaagtggcagatgga
tcaaaacatgccaacagtgggaaaaagtctacagggtctaaaaagtcagcagttcaaaag
aaggtatcatctgagaagaaagcgaagaaaacaaagcctactgtggcttctacatctggt
cctactaaaaagccttctttctctacgaacaagagaatacatgtgacaccattccctgaa
tctgagacgccaatgagacctcggaagattatgaagtctgtagagacaaaagataaattg
aatggtgatgctcatgaaggcaaagataaagcattggcctctaatacagtgggagatctt
tcattgtcaccgtttttttggttaagggaaggagcggatgaagaaggtggcacagttgaa
acgttaagtgaaccaccatcattggccacacccttgcgtcacaatgcaccttgttttagt
gacattaaaagttctgatgacggaacccctcctaacgcgactccaaatagcaaagctgct
gttccagatgtctttgatagtgaaatctttgaatggtcccagaagccttgctctccagag
ctgcgttccactccacgcaaaaagcagggtaaatttgaggatatgttagatcacataaca
gagacaaatgacgaggaagatatacaacttggtggttcatttgatgagtcaggtcatgca
aatgatgcagctcagcctgtcaatgctaaagaaatgaatcagaatgggaagaaggcaaga
gatgggaacagcaggaagacaaagttgctaaaggtcatcacaaaagaaactgaggccaac
caacaagattcgaacatcactaaaagtcttgctgcaaagtcatgtgagaagaacagcagt
actatagatatgaatacttcaagtagaagaaacaaggctggtaacaacatcaatctattg
ccttgctctaataataactcaatggggacatttcatcctcaagaaaatactttggagatt
gaagtacatgatggacacctcttaaaaagatctcaggagaaggagaacagtggtcaacaa
aggaaatgtgcaaagaagctgggaacgacagggaagagtgcagttgagactacaaaaggt
aactctgagccaagaagtaagcgagttagaaaaatgcctgatggtgacaatgcagaaaag
ataaaagttattgatggctctagagatgaaacagaaatgccactactacacagcttcatg
aaaagttgcacccaacacaaacttttcgatggtagaagtaaaaagagcagtaaaaagagc
aagctcagtgaagaaatgaatggtcagatagggcttgatagcatgaaatcaaacatcagt
gcaaatacttcaagcattttacttggtagatgccaaagtagcgaggcatcgtttaagaac
aaatgtgcgaaaggtatcaaacaagcagatagtttaggaatgaaaaactttggaaagctc
caagcttgcactggtaatactttcctgaagaaatgtgatgccactgtctctaaggttttc
tgtgctttctgccagtctgctgatatcacagaggagtctggagagatggttcactaccat
aagggaaaacaagtccctgcagagttcagtggaggggctaatgtcatacactctcacaag
aactgcatggagtgggctccagatgtctactttgaagatgactcagtgtttaatcttaca
cctgagttgactagaagcaaacggatcaaatgtgcttgctgtggagttaaaggtgcagcg
cttggatgctttgacaagagttgtcggaaaagcttccacttcacatgtgctaaattggtc
ccggaatgtagatgggataatgaaaactttgtgatgctctgccctttgcatcagtcttcc
aagttgccaaatgaagtttctgagccacaaaagcaatccaaacggataacagcaccaaaa
tgtccatctcaagtaagagctagccaagcttgcagtaataactggacatggccatctgga
tcaccacagaagtgggttctctgctgttcagctctttctgctagtgagagggaagttgta
tcagaatttgcaaaattagctggcgtgcctatttccaagagctggagccccagcgttacc
catgttgttgcatcaaccgacccttctggtgcttgcaagcgtacactgaagtttctgatg
gcaatcttgaacggcaaatggatcgtctccatcgactgggtcaaggcttgcatggatcgc
atggaacctgccgatgagcagaaatttgaagtcaccaccgatgttcatggggtcagagag
ggtcccaaattaggaagacagagagcaatcaacaagcaacccaagctgttcaacggcatg
cagttctacctccacggagactacaccttgtcctacagaggcttcctgcaggacctcgtg
gtcgcggcaggcggcaccgtcctgcaccggaggcccctctcaagggaccagcagaagctg
ctcgacgacagctcccccgttgtcgtcgtgtacagcgttgagaaccaggggaaggcgatg
ctcgatgacaatgacgatgaccgctgcaggcaggctgatgaagcccaggccctggcctgc
gcctctggtggcaaagccgcgagcagcgcctggataattgactccatagcagcttgcaag
ctgcagcccctgtga
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