Hordeum vulgare subsp. vulgare (domesticated barley): 123416943
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Entry
123416943 CDS
T11213
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123416943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123416943
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
123416943
Prokaryotic type
Archaeal type
TFB
123416943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_PaaD
HTH_Tnp_ISL3
Zn_ribbon_tTFIIB
Motif
Other DBs
NCBI-GeneID:
123416943
NCBI-ProteinID:
XP_044962761
UniProt:
A0A8I6WXV8
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Position
1H:483281165..483282413
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AA seq
313 aa
AA seq
DB search
MPSGADERVYCPDCRRSTEVVLDHGTGDTICTECALVLDAHYIDEGSEWRNFADDGGGED
RDPSRVGASGDPFLNAKLSTVIAYAKKPGGKASGEPNALPRTSVPGDGAGAASDRTLVDG
FRGIGDMADRLGLVATIRDQAKETFKKLDEAKGVPRGRNRDSVYAACLYIACRNLGMPRT
YKELASVTAAGPAAKKDIGKMSTHIKKLLGEEDGQVMDIGVVSASDYLRRFCSRLGLGNQ
DVRDAQEAVRRLEERLDVRRNPESIAAAIIYMVVQRAGASNSVKDVSVATGVAEGTIKEA
HKDLTPHAQMLFG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcggcgcggacgagcgggtctactgcccggactgccgccgctcgacggaggtg
gtgctggaccacggcaccggcgacaccatctgcaccgagtgcgcgctcgtcctcgacgcg
cactacatcgacgagggctccgagtggcgcaacttcgccgacgacggcggcggcgaggac
cgcgaccccagccgcgtcggcgcctccggggaccccttcctcaacgccaagctctccacc
gtcatcgcctacgccaagaagcccggcggcaaggcctcgggcgagcccaacgccctgccg
aggacgtcggtgcccggcgacggcgccggcgccgcctcggaccggaccctcgtcgacggc
ttccgcggcatcggggacatggccgaccggctcggcctcgtcgccaccatccgggaccag
gccaaggagactttcaagaagctggacgaagccaagggcgtcccccgcggccggaaccgg
gactcggtctacgccgcctgcctctacatcgcctgccgcaacctcggcatgccgcgcacc
tacaaggagctcgcctccgtcaccgccgccggccccgccgccaagaaggacatcggcaag
atgtcgacgcacatcaagaagctcctcggcgaggaggacggccaggtgatggacatcggc
gtcgtcagcgcctcggactacctgcgccgcttctgctcgcggctcggcctgggcaaccag
gacgtgcgcgacgcgcaggaggccgtcaggaggctcgaggaacgcctcgacgtgcgccgc
aaccccgagtccatcgcagccgccatcatctacatggtcgtgcagcgcgccggcgccagc
aactccgtcaaggacgtgtccgtcgccaccggcgtcgccgagggcaccatcaaggaggcg
cacaaggacctcaccccgcacgcccaaatgctcttcggctga
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