Hordeum vulgare subsp. vulgare (domesticated barley): 123420211
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Entry
123420211 CDS
T11213
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123420211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123420211
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123420211
Enzymes [BR:
hvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123420211
Transcription machinery [BR:
hvg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
123420211
DNA repair and recombination proteins [BR:
hvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
123420211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
123420211
NCBI-ProteinID:
XP_044963230
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
MLRNGNEGMSTIPGFSQIQFEGFFRFINQALAEELDKFPTIKDPDHEIAFQLFAKGYQLL
EPSIKERDAVYESLTYSSELYVSARLIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIV
INQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISILV
LSSAMGSNLREILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSES
LCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNNTFLLPRDVLAATDHLIGMKFGTGI
LDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTS
TSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPS
HYGRICPIDTSEGINVGLTGSLAIHARIDHLWGSIESPFYEISAEKAKEKKERQVVYLSP
NRDEYYMIAAGNSLSLNQGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLI
PFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIISTD
SHKILLSSSGKTISIPLVNHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELAL
GKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKEIP
HLEEHLLRNLDKNGVVRLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTS
KETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKIL
PRQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQE
ASRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQV
DEKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEMEVWALEGFGVAHILQEILTYKSDHLI
ARQEILNATIWGKRIPNHEDPPESFRVLVRELRSLALELNHFLVSEKNFQVNREEV
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgctccggaatggaaacgagggaatgtccacaatacccggatttagtcagatccaattc
gagggattttttaggttcattaatcaagccttggcagaagaacttgacaagtttccaaca
attaaagatccagatcacgaaattgcatttcaattatttgcgaaaggatatcaattgcta
gaaccctcgataaaagaaagagatgctgtgtatgaatcactcacctattcttccgaatta
tatgtatctgcgagattaatttttggtttcgatgtgcaaaagcaaaccatttctatcgga
aacattcctataatgaattccttaggaacctttattataaatggaatataccgaattgtg
atcaatcaaatattgctaagtcctggtatttactaccgctcggaattagatcataaggga
atttctatctacaccgggactataatatcagattggggagggagatcggaattagcaatt
gataaaaaagaaaggatatgggctcgcgtgagtagaaaacaaaagatatctattctagtt
ctatcatcagctatgggttcgaatctaagagaaattctagataatgtttcctaccctgaa
attttcttgtctttcccgaatgctaaggagaagaagaggattgagtcaaaagaaaaagct
attttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggagtcc
ttatgcgaggaattacaaaagaaattttttcaacaaaaatgtgaattaggaaggattggt
cgacgaaatatgaatcggagacttaatcttgatatacctcagaacaatacattcttgtta
ccacgagatgtattggccgctacggatcatttgattggaatgaaatttggaacgggtata
cttgacgatgacgatatgaatcacttgaaaaataaacgtattcgttcggttgcggatctg
ttacaagatcaattcggattggctcttggtcgtttacaacatgcagttcaaaaaactatt
cgtagagtattcatacgtcaatcgaaaccgactccccaaactttggtaactccaacttca
acttcaattttattaataactacttatgagaccttttttggcacatacccattatctcaa
gtttttgatcaaacgaatccattgacacaaactgttcatgggcgaaaagtgagttgttta
ggtcctggagggttgacggggagaaccgcaagttttcggagccgagatattcatccgagt
cactatgggcgtatttgtccaattgacacgtctgaaggaatcaatgttggacttactgga
tccttagcaattcatgcgagaattgatcacttgtggggatctatagagagtccgttttat
gaaatatctgctgagaaagcaaaagaaaaaaaagagagacaggtggtttatctatcacca
aatagagatgagtattatatgatagcagcaggaaattctttgtccttgaatcaaggtatt
caggaagaacaggttgttccagctagataccgccaagaattcttgactattgcatgggaa
cagattcatgttagaagtatttttcctttccaatatttttctattgggggttctctcatt
ccttttattgagcacaatgatgcgaatcgggctttaatgagttctaatatgcagcgccaa
gcagttccactttctcggtccgagaaatgcattgttggaactggattggaacgccaaaca
gctctagattcgagggtttccgttatagccgaacgcgagggaaagatcatttctactgat
agtcataagatacttttatcaagtagtgggaagactataagtattcctttagttaaccac
cgtcgctctaacaaaaatacttgtatgcaccaaaaacctcgggttccacggggtaaatcc
attaaaaaaggacaaattttagcagaaggagctgctacagttgggggggaacttgcttta
ggaaaaaacgtattagtagcttatatgccatgggaaggttacaattttgaagacgcagta
ctaattagcgaacgtttggtatatgaggatatttatacctcttttcacatccggaaatat
gaaattcagacggatacgacaagccagggctccgctgaaaaaatcactaaagaaatacca
catctagaagaacatttactccgcaatttggacaaaaatggagttgttaggttgggatcc
tgggtagaaactggtgatattttagtaggtaaattaacgcctcagatagcgagcgaatca
tcatatatcgcagaagctggattattacgggccatattcggccttgaggtttccacttca
aaagaaacttctctgaaattacctataggtggaagagggcgcgttatcgatgtgaaatgg
atccaaagggaccccctcgacataatggttcgtgtatatattttacagaaacgtgaaatc
aaagttggggataaagtagccggaagacatgggaataaagggatcatttccaaaattttg
cctaggcaagatatgccctatttgcaagatggaacacccgttgatatggtcttcaatccc
ttaggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagcg
ggggatctgctaaagaaacattatagaatagcaccctttgatgagagatatgagcaagag
gcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatcca
tgggtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggcgac
ccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagtt
gatgagaaaattcatgggcgttctactgggccctactcacttgttacacaacaaccggtt
agaggaagagccaagcaagggggacaacgagtaggagaaatggaagtttgggctttagaa
ggatttggtgttgctcatattttacaagagatacttacttataaatctgaccatcttata
gctcgccaagaaatacttaatgctacgatctggggaaaaagaatacctaatcatgaggat
cctccagaatcttttcgagtgctcgttcgagaactacgatctttggctctagaactgaat
catttccttgtatctgaaaagaacttccaggttaatagggaggaagtttga
DBGET
integrated database retrieval system
