Hordeum vulgare subsp. vulgare (domesticated barley): 123424396
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Entry
123424396 CDS
T11213
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03030
DNA replication
hvg03420
Nucleotide excision repair
hvg03430
Mismatch repair
hvg03440
Homologous recombination
hvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123424396
03420 Nucleotide excision repair
123424396
03430 Mismatch repair
123424396
03440 Homologous recombination
123424396
03460 Fanconi anemia pathway
123424396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hvg03000
]
123424396
03032 DNA replication proteins [BR:
hvg03032
]
123424396
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123424396
Transcription factors [BR:
hvg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123424396
DNA replication proteins [BR:
hvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
123424396
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
123424396
MMR (mismatch excision repair)
123424396
DSBR (double strand breaks repair)
HR (homologous recombination)
123424396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_5
zf-CCHC_2
DUF223
DUF936
BRCA-2_OB1
DUF3884
Motif
Other DBs
NCBI-GeneID:
123424396
NCBI-ProteinID:
XP_044963940
UniProt:
A0A8I6W4K4
LinkDB
All DBs
Position
1H:complement(65146553..65153006)
Genome browser
AA seq
940 aa
AA seq
DB search
MEAPPPLTPGAVMEIWELPNGPARFQPVLQVADLRPVVAKNTTAAAAAAQHSERFRMLLS
DGVHSQQSMLGTGLNDLIKDGTLRVGSIVHLTDMTCNTIQKRRIVIVVKLEVLQSECAKI
GTPKVYEKSLPEGQEPSLPANAAQTNSGNYSGGPGMLGSTVAPKVEQIGNNLSYGRANNR
GPGVDSSICQPVQPGANNVLSGGTYGTMSAQNTMNAYVVQPNSHQNQSSALPGTGGGFGP
PGNIYGPPAQPSYQQPPPPHRNSGPAAKNEAASRVIPISALNPYQRTWTIKARVTAKAHV
RHFNKAKGSGKVFSFDLLDAQGVEIRATCFDAAVDQFYDVIEVDKVYLVSRGSLKPANKR
FNPLNNDYEMNLEPSSSIEVCSGDDSSIPKLQFNFRQISEIANMDKDTTIDLLGVVTSVR
PSFTVMLKNGGETQKRVLQLKDMSGCSVDITFWGNFCDAEGQQLQSLCDSGLNPILALKS
GRVGEFNGKTVSTTNSSLLKINPDFAEAKRLGQWYITEGKIAACTSLSGEMSSMGRTDVR
KKTAQIKDERLGQSEKPDWITVQGAISQIYTDNFCYPACTTEVNGKRCNKKVINNGDGMW
LCEKCEQSSETCEYRYLLSCHIQDHTGFTYATAFQESGQEIVGLPAQDLFRIKHEEQDDV
RFAEIIQQVRFQQYLFKLKVKEEVYNDEPRVKCNVVKAEIYDPAKESRFLLGAIDSLLVE
DASGSSPGLNGGPAVNTGFINSEADQSVPASNNSYAMNMGGPNQFGQQFSASHGMPSALS
ATPAAGSGGFAANSYGPPAASRGMPTAPSVTPAAGSGGFAANSYGPPAASRGMPTAPSAT
PAAGSGGFAANSYGPPAANASSGLCFKCNQPGHFSRDCPGQAAPYGSSVGGNANTGLCYK
CNQPGHFARDCPAQGVGQERQMYVNGAASGGYNRQSYVGS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgccgccgccgctgacgccgggcgcggtgatggagatatgggagctcccgaac
gggccggcgaggttccagccggtgctgcaggtcgctgacctgcgccccgtcgtcgccaag
aacacgaccgcggcggcggccgcggcgcagcactcggagcggttccgcatgctgctctcc
gacggcgtccactcccagcagtccatgctcggcaccggcctcaacgacctcataaaggac
ggaaccctccgcgtcggctccatcgtccacctcacggacatgacgtgcaacaccatccag
aaacgcaggatcgttattgttgtcaaacttgaagttcttcaaagtgagtgcgccaaaatc
gggacaccaaaggtttatgagaaaagcttacctgagggacaggagcctagcttaccagcc
aatgctgctcaaacaaacagtggaaactattctggtggcccaggcatgctggggtctaca
gttgccccaaaggtggagcagattggtaacaatctgtcatatggtagagccaacaacagg
ggcccaggcgttgactcttcaatttgtcagcctgttcaacctggcgctaacaatgtgttg
tctggtggaacttatggtacaatgtcagcacagaacacaatgaatgcctatgtggtgcag
ccaaactctcatcaaaaccaaagttctgcgcttcctggcacaggtgggggctttggccct
cctggcaatatatatgggccccctgcacagccttcatatcagcagccacctccaccccat
agaaatagtggcccagctgctaagaatgaagctgcttctcgtgttattccaatttctgca
ctgaacccataccaacgtacatggacaataaaggctagggtgactgcgaaggctcatgtc
aggcacttcaataaagcaaaaggttcaggaaaagtcttctcctttgatctccttgatgca
cagggtgtagaaattcgtgcaacatgctttgacgcggcagttgatcagttctatgacgta
attgaggttgacaaggtgtacttggtatctaggggatcactaaaacctgcaaacaagagg
tttaaccctttaaacaatgactatgaaatgaaccttgagccttcatcatctatagaagtt
tgttctggtgatgatagcagcatccctaagctgcagttcaatttccggcagatcagcgaa
attgcaaacatggataaagataccacgatagacttgcttggggttgttacttcagttagg
ccttcttttacagtaatgctgaagaatggcggggaaacccagaaaagagtccttcaactg
aaggacatgtctggttgcagtgtggacataaccttttggggtaacttctgtgatgctgaa
ggtcagcaactgcagtcgctgtgcgattctggtttgaatcctatacttgcactcaaatct
ggccgtgtaggtgaattcaacggcaaaacagtgagtacaactaactcaagtttgttaaaa
ataaatccagatttcgctgaagctaaaaggctggggcagtggtacataactgaaggaaaa
attgctgcctgcacttctttatctggggaaatgtcaagcatgggcaggactgatgtccgg
aaaaaaactgcacagatcaaggatgaacgcttggggcaatcagaaaagcctgattggatc
accgttcaaggtgcaatttcacaaatctacactgataatttttgttacccagcatgcacc
acagaggttaatggtaagcgctgcaacaaaaaagtcataaataatggtgacgggatgtgg
ctatgtgagaaatgcgagcagagctctgagacgtgtgagtataggtacttgctgtcatgt
catatccaggatcacactgggtttacctatgctactgcgttccaagagtctggccaggag
atagttggcctcccagcacaagatcttttcaggataaagcatgaagagcaagacgatgta
cggttcgcagaaatcatacagcaggtccgctttcagcaatacctattcaagctgaaagtc
aaggaagaagtctataatgatgagccacgtgtgaagtgcaacgttgtcaaggctgaaata
tacgacccagcgaaagagagtcgttttcttctgggggcgattgatagccttttggtggag
gatgcctcaggctcgtcccctgggctgaatggtggtcctgctgttaatactggtttcatt
aactcagaagctgatcagagtgtgccagcttccaacaattcctatgccatgaatatgggt
ggcccaaatcagtttgggcagcaattcagcgcatctcatgggatgccatctgcactttca
gcaacaccagcagcaggtagtggtggcttcgcggctaattcctatggtcctccagctgca
tctcgtgggatgccgactgcaccatcagtgacaccagcagcaggtagtggtggcttcgcg
gctaattcctatggtcctccagctgcatctcgtgggatgccgactgcaccatcagcgaca
ccagcagcaggtagtggtggcttcgcggctaattcctatggtcctccagctgccaatgcc
agctcaggcttgtgcttcaaatgtaaccagcctgggcacttttctagagactgtccagga
caggctgccccctacggttcttcagttggcggcaacgccaacactggtctgtgctacaaa
tgtaatcagcctggtcactttgcgagagactgtccggcgcagggtgttggccaggagcgc
cagatgtatgtgaatggcgccgcatcaggaggatacaacaggcaatcctatgttggtagc
taa
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