Hordeum vulgare subsp. vulgare (domesticated barley): 123424415
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Entry
123424415 CDS
T11213
Name
(RefSeq) zinc finger CCCH domain-containing protein 24
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hvg03016
]
123424415
Transfer RNA biogenesis [BR:
hvg03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
123424415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
zf-CCCH
Ubie_methyltran
MTS
Methyltransf_15
Methyltransf_11
Methyltransf_4
PCMT
RRM_1
PrmA
Ish1
AviRa
Motif
Other DBs
NCBI-GeneID:
123424415
NCBI-ProteinID:
XP_044963964
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All DBs
Position
2H:complement(11532197..11539752)
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AA seq
895 aa
AA seq
DB search
MEGTTTPPPQEQQAPELTGEKRKREEGSPAAPAGENPAMEDTTQPPQQQEEAQPAGEKRK
REEDEAPEASAGDAAPASAPAGEEATAAAPTGEGARHPMSKTSLCSFFRRRGGGPDGCNH
GEACRYAHTEEELRPRPDGTWDPTSDRAKKLRRVSEEDGEAVEDEKRGRWGQEEVTIDDS
SLDKCLVGLSRHWLTDRLKSFLDEQGISYAVAKKKKGMTVGFVTFETVEQLKNAVEVLKE
NRSGGKQIKIADANRRSHQKLHSEGPVSNNGAATENSSDAAAPDEGTPGPEAGGGTKRTV
RDAVTPLAHMTYSDQLEHKKSSVAQLLKKLTRNAKKACPADVTLPDWISNAKQIGGLSCK
LEGILESPVIDGYRNKCEFSVGHSLAGKKTVGFMLGNFREGVTAVEEPVDCPNVSALSCK
YAMMFQDFLQLSCLPAWNRVDNSGFWRQFTVREGRSPAQAVVAQDTQTQISEVMIIIQVC
STGVDEAQMKDEFAKLTKTLVQGAATCLPPLPLTTIVVQDHTGISNVAPADCPLIPLLVP
EVDQSEEGAVDKTRIHDHISNLRFSLSPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFD
VCCGTGTIGLTLAHRVGMVVGIEMNESAVVDAQRNALINGIKNCRFVCGKAEDVMGSLLT
EYLGSPQQHIAASESNSEVNAAGKKEDIVDGAENNGKSMDSLTEENDNGESQQLGDKSAN
HPTCSSKELEGGHEQCNEAVRNQNSEEASSLVNDESVDAKAADGSEHIKTSNNDVLAAIG
CQFKNFVAIVDPPRAGLHPTVIKVLRTHPRIRRLVYISCNPDTLVANAIELCTPSTEHRE
KNKGHRGWRNMSSAGLARQRTKSMPNSEPFVPKRAMAVDLFPHTSHCEMVMLFER
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggagggcaccaccacaccgccgccgcaggagcagcaggcgcccgagctcaccggggag
aagcgcaagagggaggagggatctccggcggcacccgccggagagaatccagccatggag
gacaccacgcagccgccccagcagcaggaggaggcccagcccgccggggagaagcgcaag
agggaggaggatgaagcgccggaggcatccgccggagacgccgcaccagcatccgccccc
gccggagaggaggccacagccgccgcccccaccggcgagggcgcgcggcacccgatgtcg
aagacgagcctgtgctccttcttccggcggcgggggggcggaccggacgggtgcaaccac
ggggaggcgtgccggtacgcgcacacggaggaggagctgcggccgcggcccgacggcacg
tgggaccccacctccgaccgtgccaagaagctgcgcagggtctccgaggaggacggggag
gccgtggaggacgagaagagggggcggtgggggcaggaggaggtgaccatcgacgacagc
tcgctggacaagtgcctcgtcgggctctcccggcactggctcactgacaggctcaaatcc
ttcctcgacgagcagggaatctcatatgcagtagcaaagaagaagaaaggaatgactgtt
ggttttgtgacatttgaaactgttgaacaactgaaaaatgccgtggaggtccttaaggag
aatcgatctggtgggaagcaaataaagatagcagatgccaatcgcaggtctcatcagaag
ttgcattcagaaggaccggtatctaataacggagcagcaacagaaaacagtagtgatgct
gctgctcctgatgagggaacacccggacctgaagcaggaggaggtactaaaagaactgtg
cgtgatgcagttacgccccttgcgcatatgacatacagtgatcagctagagcacaagaaa
agttcagttgcacagttacttaagaaacttactcgaaatgctaagaaagcttgcccagct
gacgttacattaccagattggatttccaatgcaaagcaaattggtggtctttcttgcaag
cttgaaggcattctagagtccccggtgattgatgggtatcgtaataagtgtgagttctct
gtgggacattccttggcgggtaaaaagacggtagggtttatgcttggaaatttcagggaa
ggtgtgactgctgtcgaggaacctgtggactgcccaaatgtttcagcattgtcctgtaaa
tatgctatgatgttccaagatttcctgcagctatcatgcttacctgcatggaatagagtt
gataattctgggttttggcgccaattcacagttcgagagggaagaagtccagctcaagct
gttgttgcacaagatacacaaacacaaatatcagaagtcatgattattatccaggtatgc
tcaacaggtgttgatgaggcacagatgaaagatgagtttgccaagttgaccaagacattg
gtgcagggggctgcaacatgcttacctccattgcctctaacaactatagtagttcaagat
cacacgggaatatcaaatgtagcacctgctgactgtccactgatcccactattggtgcca
gaagtggaccaatcagaagagggggcagtggataaaacaagaatccatgaccacattagc
aatcttcggttctctctatcaccaacagcattttttcaggttaatactcttgctgcagaa
cgattgtacacccttgctggtgattgggccaatctcaattcggacacattactttttgac
gtatgctgtgggactggaacaattggcctgacattagcacaccgtgttggaatggttgtt
ggcattgaaatgaatgaatcagcagttgtggatgctcagagaaatgctcttattaacggt
ataaaaaattgccgttttgtctgtgggaaggctgaagatgtgatggggtctcttctcaca
gagtatcttggttcgccacagcagcacattgcagcttctgaaagtaattcagaagttaat
gctgcaggaaaaaaagaggatatagttgatggtgcagagaataatggtaaaagtatggac
agcttaacagaggaaaatgacaatggtgaaagtcagcagctgggagacaaatcagctaat
catcccacttgttctagcaaagagttggaaggtggacatgagcaatgcaatgaggctgtt
cgtaatcaaaacagcgaggaagcatcatcattggtcaatgatgagtccgttgatgcaaaa
gcagctgacggttcggagcacatcaaaacatctaataatgatgtgcttgcagctattgga
tgtcagttcaagaactttgttgctattgtagatcctccgcgtgctgggctccaccctact
gtgatcaaggtattgagaactcatccgcgcatccgtcgtctagtgtacatttcctgcaat
ccagacactctagttgccaacgcaatcgagctctgcaccccgtcgaccgagcacagggaa
aagaacaagggccaccgtggatggcgaaacatgagcagcgccggcctcgcgaggcagagg
accaagtcgatgcccaactcggagccctttgtccccaagagggccatggcggtcgacctg
tttccccacacctcgcactgcgagatggtcatgctcttcgagaggtga
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