Hordeum vulgare subsp. vulgare (domesticated barley): 123424575
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Entry
123424575 CDS
T11213
Name
(RefSeq) probable pectate lyase 4 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg00040
Pentose and glucuronate interconversions
hvg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123424575
Enzymes [BR:
hvg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123424575
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123424575
NCBI-ProteinID:
XP_044964142
UniProt:
A0A8I6WNB5
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Position
2H:complement(25446455..25448392)
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AA seq
390 aa
AA seq
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MGARASSCFSFSRLCCCWISFPSSAPRPPPTPPAAAAIAYLPCPDMDTGTAPGAATTEAR
LPPHPRTPYADADRTLRALAAAAEGFGRRAIGGLHGALYHVTSLQDDGQGTLREACRAKE
PLWIVFEVSGDIHLRTYLRVSSHKTIDGRGQRVRLTGKGLQLKDCHHVIVCNLRFEAGRG
HDVDGVQIKPGSTNIWIDRCSLADYDDGLIDITRQSTDITVSRCHFARHDKTMLIGADPT
HVDDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRDWGVYAVCAGVEAQIVSQCNI
YEGGHKKTVFKYMPEKAADREETVAGWIRSEGDAFLHGALPCLVDGPGAECVFRPEEYYD
KWTMEAASPALKEVIQLCAGWQPVPRPPDC
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcccgtgcctcctcctgtttctctttctcccgcctctgctgctgctggatctcc
ttcccctcctccgccccgcgtcctcctccgactccacccgccgccgccgcaatagcctac
ctcccctgccccgacatggacacggggactgcgccgggggcggcgacgacggaggcccgc
ctccccccgcatccgcggacgccctacgccgacgcggaccgcaccctccgcgcgctcgcc
gccgccgccgagggcttcggccgccgcgccatcgggggcctccacggcgccctctaccac
gtcacctccctccaagacgacgggcaggggacgctgcgggaggcgtgccgggccaaggag
ccgctgtggatcgtcttcgaggtgtccggcgacatccacctccgcacctacctccgcgtc
tcctcccacaagaccatcgacgggcgcggccagcgggtcaggctcaccggcaagggcctc
cagctcaaggactgccaccacgtcatcgtctgcaacctccggttcgaggccggccgcggg
cacgacgtcgacggcgtccagatcaagcccggctccaccaacatctggatcgaccgctgc
tccctcgccgactacgacgacggcctcatcgacatcacccgccagagcaccgacatcacc
gtctccagatgccactttgcaaggcatgacaagacgatgctcatcggcgcagaccccacg
cacgtcgacgacaggtgcatcagggtcaccatccaccactgcttcttcgacggcacgcgg
cagaggcacccgcgcctgcgcttcggcaaggtccacctctacaacaactacaccagggac
tggggcgtatacgccgtctgcgccggcgtagaagctcagattgtgtcccagtgtaacata
tacgaaggaggacataagaagacggtcttcaagtacatgccggagaaggctgctgacaga
gaagagacggtggccgggtggatcaggtcggagggcgacgcgttcctgcacggggcgctg
ccgtgcctggtcgacggcccgggcgccgagtgcgtcttcaggccggaggagtactacgac
aagtggacgatggaggcggcgtcgccggcgctcaaggaggtcattcagctctgcgccggg
tggcagcctgtgcccaggcccccggactgctag
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