Hordeum vulgare subsp. vulgare (domesticated barley): 123425030
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Entry
123425030 CDS
T11213
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123425030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123425030
03041 Spliceosome [BR:
hvg03041
]
123425030
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123425030
Spliceosome [BR:
hvg03041
]
Complex B
Other components
Prp19-related factors
123425030
Complex C
123425030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_15
TPR_19
ARM_TT21
ARM_TT21_C
TPR_16
TPR_5
Motif
Other DBs
NCBI-GeneID:
123425030
NCBI-ProteinID:
XP_044964637
UniProt:
F2DLP9
LinkDB
All DBs
Position
2H:66132517..66137137
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AA seq
931 aa
AA seq
DB search
MPSAAAGPVEVAPPAKAAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVARA
SAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHVRPHPISHPAYASLNNTFERALATM
HKMPRVWVLYLTSLLDQRLLTRGRRNFDRALRALPVTQHDRIWPLYLRLASLPACPVETS
FRVFRRYLQFDPSHAEDFIEFLVSAERWQEAADRLASVLNDDGFRSVKGKTRHQLWLELC
DILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVAS
VMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGAVESDDGEKGGKKNKVDKLEKELAACW
LNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFDKDPARQVATYVE
AVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCEWA
EMELRNQHFDKAIELMRLATAEPSVEVKRRAAAEGDQPVQLKLHKSLKLWSIYVDLEESL
GSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIW
VTYLTKFVTRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD
EAVRAVPNTEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVMVMCMKFAELER
NLGEIDRSRAIYIHASNYADPNAHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNMDEAVDTLTRAGVPQDEMAALERQLASGPSPAPAAAPSTSTTP
ANRMMNFVSAGVEARAESSTQQTTANNEDIELPDEESDEEDDVQIAERAVPEAVFGELGK
RAAESREESSNAQENNEQQLGALERIKRRRQ
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggctgccgcgggcccggtggaggtggcgccgccggcgaaggcggccgccctc
ccgttcgccgggatctcgccggacctctacccgacggaggacgacctgccctacgaggag
gagatcctgcgggagcccttcaagctcaagggctggtggcgctacctcgtcgcccgcgcc
tcggcgcccttcgccaagcgcgccgtcatctacgagcgcgccctcaaggcgctgccgggg
agctacaagctctggcacgcctacctccgcgagcgcctcgaccacgtgcgcccgcaccca
atctcccacccggcctacgcctccctcaacaacaccttcgagcgggcgctcgccaccatg
cacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgcctgctc
acgcgcggccgccgcaacttcgaccgcgccctccgcgcgctgcccgtcacgcagcacgac
cgcatctggccgctctacctgcgcctcgcctcgctcccggcctgccccgtcgagacctcc
ttccgcgtcttcaggcgctacctccagttcgacccctcccacgccgaggacttcatcgaa
ttcctcgtctcggccgaacgctggcaggaggcagccgaccgcctggcctccgtactcaac
gacgatggcttccgctctgtcaaggggaagaccagacaccagctctggctcgagctctgc
gacattctcactaagcatgcagatgaggtcgcagggctcaaggtggacgccatattgcgc
gggggcatacgcaagttcaccgacgaggttggcaagttgtggacctcgctggccgattac
tatgttcggaggaccctctatgagaaagctagagacgtctttgaggagggggttgcttca
gtgatgacagtgcaggagttcagtgtggtgtttgaggcttatacacaatttgagcagagt
atgcttgcggcaaagctggaggcagctgaagaggacggggctgtggagagcgatgatggt
gagaaagggggcaagaagaataaggtggacaagctagagaaggaacttgcagcgtgttgg
ttgaacgatgaagatgacacggatttgaggctggcaaggtttgagcggctattggatcgc
agaccagagctccttagcagtgtcctgttgagacagaatccacataatgtggaggagtgg
cacaggagggtgaaactttttgacaaggatcccgcgaggcaagtagcaacatatgtcgag
gctgtgaaaactgtggacccaatgaaggcagttgggaaacctcatactctatgggtggca
tttgcaaagatgtatgagaaacataaccgcttagatagtgctgaagatatctttaaaaag
gccacacaagtgaactataaagcagtggaccacttggctactatttggtgtgaatgggct
gagatggagctccgcaaccaacattttgacaaggcaattgagctgatgaggttagcaaca
gcagagccctctgttgaggtgaagaggcgagctgctgccgagggtgaccagcctgtacag
ctgaaattacataaatctctgaaattatggagtatctatgttgacctggaggagagcctt
gggtcgttggaaacaacccgcgctgtttatgagagaatattagatttaagaattgcaact
cctcaaataattcttaattatgcgttccttcttgaggagaacaagtatttcgaagatgca
tttaaagtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgg
gtgacctacctcacaaagtttgtaacaaggtaccagcgaagcaagttagagcgggcaaga
gagctgttcacggaagctgtcgaaaaggctccgccgcatgaaaagaaggccttatatttg
caatatgctaaactggaagaggactatggcctcgcaaaacgtgccatgaatgtatatgat
gaagctgtaagggctgttcccaacactgaaaagatgagtatgtatgaaatatacattgca
cgtgctgctgaacttttcggtgttccaaggaccagacaaatatacgagcaagctatagaa
tctggtctcccggacaaagatgttatggtgatgtgcatgaagtttgcggaacttgaaaga
aatcttggagaaattgaccgttcccgggctatttatatccacgcctccaactatgctgat
ccaaatgctcatccagagttctggaagaaatggaacgactttgagatccaacacggtaat
gaagatacattcagggagatgcttcgcatcaagcgtacagtggctgctagccgcagtcag
actcatttcatccttccggagtacctgatgcaaagggaccagaggctaaacatggacgag
gcggtcgacactctgacacgtgccggtgtcccgcaggatgagatggcagccttagaaagg
cagctagcttctggaccatccccagcgccagcagcagcaccgagcaccagcacgactcct
gctaacagaatgatgaactttgtcagtgctggagtagaggcgcgggccgagagcagcaca
caacagaccactgctaacaacgaggacattgagctgcctgatgaagagagtgacgaggag
gacgatgtccagatcgcggagagggctgtccctgaagccgtgtttggcgagcttggcaag
agagccgcggagagcagggaggaaagctctaatgctcaagagaacaacgagcagcagctg
ggcgctctcgagagaattaagcgaaggcgtcaatag
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