Hordeum vulgare subsp. vulgare (domesticated barley): 123425158
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Entry
123425158 CDS
T11213
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123425158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123425158
03041 Spliceosome [BR:
hvg03041
]
123425158
03009 Ribosome biogenesis [BR:
hvg03009
]
123425158
03016 Transfer RNA biogenesis [BR:
hvg03016
]
123425158
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123425158
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123425158
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123425158
Complex C
U4/U6.U5 tri-SnRNP related factors
123425158
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
123425158
Transfer RNA biogenesis [BR:
hvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123425158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ArAE_1_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123425158
NCBI-ProteinID:
XP_044964772
UniProt:
A0A287HHI1
LinkDB
All DBs
Position
2H:79228637..79236874
Genome browser
AA seq
1006 aa
AA seq
DB search
MEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSK
DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI
AMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAM
LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW
ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS
QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM
SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSGRAGR
RGMDARGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV
IRNSFHQFQYEKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEI
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSALPPALSASRNNYIVDTLL
HCSSSSSENGVNGPRSKPRPPRQGEKGEMHVVPVPLPLLSGLSSVRISIPTDLRPPEARQ
NILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQ
QLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAA
CLIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMLQLSE
AARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRL
VRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaattccagcaagcgtaaagcacctgagctgagctcggaggacaat
tcctctgctgttgttctgcacgagcaggagccgctgcctggctcgactgccaagcgtcag
aatctcgcccggtcgtgcatccatgaggtcgctgtccccaacggctacgatttgtccaag
gatgaggccgtacatgggaccctttcaaaccctgcgtttaatggggagatggccaagaca
tacccgtttcagcttgaccccttccagagcatctcgatcgcgtgcctggagcggaatgaa
tctgtcctggtctcggctcacacctctgcagggaagacggccatcgctgagtacgccatt
gcaatgtcgttcagagacaagcagagggtgatatacacctctccgttgaaggctcttagt
aatcagaagtacagggagcttagtcaggagttctctgatgttggattgatgactggtgat
gtcacgcttcagccaaatgctacttgcctggtcatgacaacagaaatcctgagggcgatg
ctttataggggctccgaggtgatcaaggaagttggttgggttatatttgatgagatccac
tacatgaaggatcgtgagagaggcgttgtgtgggaagagagtatagttttcctgccccct
gccatcaagatggtctttctttctgctaccatgtcaaatgcaaccgagttcgctgagtgg
atatgcaatctgcacaagcagccttgtcacgtggtgtatacagacttcaggccaacacca
ctacagcactatgtgttcccaataggtgggtctggtctctaccttgtagtggatgaaaat
ggtcagttcagggaggataactttctaaagctgcaagacacatttgcaaagcaacctagt
caaccagatgggaggaagggtggtgggcctaaagccagtggccgaatcgcaaaaggtgga
aatgcttctggaacatctgacatatacagaattgtcaagatgattatggaccgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcatcatgccatgtcgatg
tcaaaacttgatttcaacactcaggaagaaaaggataacatcgagcaggttttccgtagt
gctattttctgtttaagtgaggaagatagagggttacctgctatagagttgatgttgcct
cttcttaaacgaggtattgcagtacaccattctggactgcttccattaattaaagagctg
gtggaattgctcttccaagaaggtcttgtgaaagctctttttgctactgagacgtttgcc
atggggctgaacatgcctgcaaaaacagttgtattcacatctgtcaagaaatgggacggt
gatagtaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcga
cgtggcatggatgcacgtggcatttgtgttataatgattgatgagaagatggaaatgagt
gttatcaaggacatggtgttaggtaaaccagcgcctctcatcagcactttccgactgagc
tactatactattctgaatttactgagtcgtgcggagggccaatttactgctgaacatgtg
atccggaattcattccaccagtttcaatatgaaaaggcattacctgaagtcgttcagaag
attacaaagttggaaaatgaagctacattgctggattcttctggagagaatgatcttgcc
gagtatcacaagttagggcttgatatatctgaacttgaaaagaaaatcatgtctgagatt
attagaccagagagagctttgttatatttggtccctggaaggctggttaaagtcagagat
ggctcaacagactgggggtggggtgtggtcgtaaatgttgtgaagaaacctccagcatct
agtgctctcccccctgcattaagtgcatctcgcaataactatatagtggataccttgctt
cattgttcttcaagttcaagcgagaacggagtcaatggaccacgttcaaagccacgccca
cctcgccaaggggagaagggagaaatgcatgtggtgcctgtaccattacctttattatct
ggtctaagcagtgttagaatcagcattccaactgatctacgaccacctgaagcgagacaa
aacatactctttgcagttcaagaactaggaaaacgttacccccaagggcttccaaagcta
catccaattacggacatgggtattgaagaacctgaattagttgacttggttcataaactt
gatggtctcgagcagaaattatgttctcatccacttaataagtctgatcaaagtgagcag
caactgtcatggtaccaaagaaaggctgaactgaatcatgaaattcaacaactaaagtca
aagatgcgggattcacagctgcaaaaatttagggatgaactaaagaaccggtctcgcgtc
ctgaagatgcttggtcacattgacacggatggtgttctccagctaaagggacgtgctgcc
tgtttaatagacactggggatgagctgcttatcactgaacttatgttcaatggtacattt
aatgatcttgatcaccatcaagttgcttctgttgttagctgctttgtaccgtgtgagaag
tcaagtgagcaaatacgcctgagaaatgagctttctaagccaatgttgcaactctcggag
gctgcaagaaaaattgctgaggtacaacgagaatgcaaattggacgtaaatgtggaagaa
tatgttgaatcaacttgtaaaccctatctgatggatgtcatatactgctggtcaaagggc
gcgaccttcggagaggtgatagaaatgactgacatttttgaaggaagcatcatacggcta
gttaggaggctggatgaatttctaaatcagctaaaagctgccgctgaagccgttggggag
gttaaccttgagaagaagtttggagcggcgagcgagagcttgcgccggggcatcatgttt
gccaactcattgtacctgtga
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