KEGG   Hordeum vulgare subsp. vulgare (domesticated barley): 123425403
Entry
123425403         CDS       T11213                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
hvg  Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123425403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hvg03041]
    123425403
Spliceosome [BR:hvg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    123425403
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 PRP4 NBCH_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_Vps41 WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C DUF7899 Tricorn_2nd Beta-prop_SCAP WD40_like Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 123425403
NCBI-ProteinID: XP_044965032
UniProt: A0A8I7B5F0
LinkDB
Position
2H:complement(110604625..110616683)
AA seq 514 aa
MENPRPLPPAITPPMAPLPVPPPIAPVPVSPRAPASTSAAAGGGDEEEVDYEVSDDHRAA
RERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEGAMERRDRLRALMAR
LEAEGQFDRLLRAQEDEQGAPGDDEEDTEEQIKYPFFTEGTNQLLQARVDIAMYSLPRAK
ARVERAKRRLADPDEDPEAEAGLVVKQAADFVLECSEIGDDRPLTGCSFSRDASMLATSS
WSGIVKVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADRTAKLWNSHGSLLMSF
DGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYDLSFHPDGSL
AASCGFDATARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTR
QMIYSIPAHKSLISHVKFEPQEGYYLVTSSYDTKAALWSTRDYRPIKSLSGHESNVSSLD
ISGDGQQIVTVSHDRTIKIWSCRGSARDDEMELD
NT seq 1545 nt   +upstreamnt  +downstreamnt
atggagaaccccaggcccctaccccctgccatcacccctcccatggcccccctccccgtc
cccccacccatcgcccccgtccccgtctcaccccgcgcccccgcctccacatccgccgca
gccggaggcggagacgaggaggaggtcgactacgaggtctccgacgaccaccgcgccgcg
cgggagcgccacgagcgcgccgtacaggagctcctgcagcgccggcgcgcctacgccatg
gccgtgcccaccaacgactccgccgtgcgcgcgcgcctccgccgtctcggcgagcccatc
acgctcttcggcgagggcgcgatggagcgccgcgaccggctacgcgcactcatggcccgc
ctcgaggccgagggccagttcgaccgcctcctccgcgcgcaggaggacgaacagggagcc
ccgggcgacgacgaggaggacacggaggagcagatcaagtacccgttcttcaccgagggg
accaaccaactgctccaggcgcgcgttgacatcgccatgtactcgctgccccgcgccaag
gccagggtcgagagggccaagcgacgactcgccgaccccgacgaggaccccgaggcagag
gccggacttgttgtgaagcaggcggcggacttcgtgcttgagtgcagcgagattggagat
gaccgcccgctcaccggctgctccttctcccgcgacgcctcgatgctcgccacaagttcc
tggagcggaatcgtcaaagtatggagcatgccgcagataaccaaaattgcaaccctgaaa
ggtcatacagaacgcgcaactgatgttgccttctctccagtcgataactgcttagcgaca
gcctcagctgatagaactgccaaattgtggaacagccatgggtcacttctaatgtccttt
gatggtcacctggatcgtcttgctcgccttgcttttcatccatctggaaagtaccttggc
acagctagctttgacaagacctggagattatgggacatcaatactggaactgaacttcta
ctccaggaggggcatagcagaagtgtatatgatcttagctttcaccctgacggttcttta
gctgcatcttgtgggtttgatgcgactgctcgagtttgggatctcagatcaggaagattg
tactgtaccctcattggacatgtgaagcctgtcctaggagtcagcttctcccctaatggt
catctggttgcaaccgcaagtgaagacaatttctgtcgaatatgggatttgaggaccaga
caaatgatttattctataccagcacataagagtcttatctcacatgtgaaatttgaaccc
caggagggttattatttagtgacatcttcctatgacactaaagcagcgctgtggtcaact
cgggattacagaccaattaaaagcttgtcaggccatgagtcaaatgtttctagtctggat
atcagtggagatggacaacagattgtgactgtttcacacgatagaacgataaagatttgg
tcatgcagaggcagcgcgcgggatgatgagatggagttggattaa

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