Hordeum vulgare subsp. vulgare (domesticated barley): 123425442
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Entry
123425442 CDS
T11213
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123425442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123425442
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
123425442
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
RAG1_imp_bd
AAA_16
Motif
Other DBs
NCBI-GeneID:
123425442
NCBI-ProteinID:
XP_044965080
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All DBs
Position
2H:117560855..117569493
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AA seq
986 aa
AA seq
DB search
MRRSKETVAPPAAFPSPLLLSAPLQKPQCRASPPSAAMDVAPGEAAPSGMYYHTKRKPSD
PISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEANMIYS
SVEQTEQKKSEVLIILDSDNEDESMAAYKQLTPEKNKQLSSEKNKHLIPSENAGTLTTCV
ATQGIADVNETMRDGDQNSHIVPYGQSATLMNQYPLPRYQPSVQFERVVLQKRPEEERIH
DLAVASHAEKMAETLVFPSLPKERKQRKYDPSSQTDGDAEAGPRKRKRKGKNEASPAVFD
LPSKTYNPVEEDEPMEEEDKPENESDDLDGFWNEYSLALESSKLDTAEEVASEKEVGEKE
VDNDCSHDIRIHEDLGHVCRVCGMIVRRADMIFDYQWKKPSRSRSYFSETRSKDSDDIVI
GDVRVTEELMALDVAIHPRHAKQMRAHQLAGFHFLVKNLVSDKPGGCILAHAPGSGKTFM
LISFIQSFLARYPSSRPLVILPKGILGTWKREFQRWQVEDIPLYDFYSVKAEKRAEQLEI
LKSWQAKMSILFLGYKQFSQIVCSDGGGNVAAACRDMLLKVPSLLIMDEGHTPRNRETDV
LESLSRVQTPRKVVLSGTLFQNHVSEVFNILNLVRPKFLKSDSSRPIVKRIMSQVAISGG
RISKGSADNAFTESVEETLLHDDNFTRKAHVIRSLRELTKDVLHYYKGDILDELPGLVDI
SVFLKLSPKQKEIVHKLESYEKFKRSAIGTAVYMHPCLSGMSEFDAADRAINLTNASIDS
LVESINVTDGVKARFFTNILALANSAGEKVLAFGQYILPMKFLERLLVKTRGWNVGKEIF
VINGDTSQEERELATDQFNNSADAKVLFGSIRACGEGISLVGASRVVILDVHLNPSVTRQ
AIGRAFRPGQQKKVFVYRLVAADSQEESFHQTAFKKEVIPKLWFEWSEQHCTSDDFRLNK
VDIDNCEDELLDNRAMRQDIKVLYKR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggagcaaggagaccgtggcgccacccgccgctttccccagtcctctcctcctc
tccgccccgctccaaaaaccacagtgccgcgcttcgccgccgtcagcggccatggacgtc
gcccccggcgaggcggcgccctctggcatgtattaccacacaaaaaggaagccttctgac
cccatcagtggcctttcacttcctggtgcaaagatggttggcaattggggatttggcagt
gttaccaaggactgggaaagtgtgaatgctcggaagttccaatttataaatttcctttct
actctgcgtaagcccactcagagttatgtggcgtgtgctgaagctaatatgatttatagc
tctgtcgagcaaacagagcagaaaaagagcgaagtgctaataattcttgattcggataat
gaagatgaaagcatggcagcatacaaacaacttacgcctgagaaaaacaaacagctctca
tctgagaaaaacaagcacctgataccatcggaaaatgctggtactctcacaacatgtgtg
gcaacccaaggaattgccgacgtaaatgagaccatgcgtgatggagaccaaaacagtcat
attgttccatatggtcaaagtgcaactttaatgaatcagtatcctttaccccgctatcaa
ccatcagttcagtttgagagagttgtattgcagaaaagacctgaggaggaacgtatccat
gatctggctgttgcaagccacgcggagaaaatggcagaaacacttgttttcccttctctt
cctaaggagagaaaacaacggaaatatgacccaagctcccagacagacggagatgctgaa
gctgggccaagaaaaagaaaaaggaaaggcaaaaatgaagcgagtccagcagtatttgat
ttgccctcaaaaacttacaatcctgtcgaggaagatgagcctatggaggaagaggataaa
ccagaaaatgaaagtgatgatctcgatggtttctggaatgaatactcactggctctggaa
agctctaagcttgacacagctgaagaggtagccagtgagaaagaagtgggtgaaaaagag
gtggacaatgactgcagtcatgacatacggattcatgaagacctgggccatgtatgccgt
gtctgtggtatgattgtgagaagggctgacatgatctttgattatcaatggaaaaagcca
tcaaggtcaagatcatatttcagtgaaacacgctcaaaggattctgatgacattgtcatt
ggtgatgttagagtcactgaagaactcatggctttagatgttgccattcatccaagacat
gcaaagcaaatgagagcacatcagttggcaggtttccactttctggtgaagaatttagtc
tctgacaaaccaggaggttgcattctagctcatgcccctggttcggggaaaacatttatg
ctgattagtttcattcagagcttcttggcaaggtacccctcttcaaggccccttgttata
cttcctaaaggcatattaggtacatggaagagggaatttcaacggtggcaagtggaggat
ataccactgtatgacttttattctgtcaaggctgagaagagagcagagcagttggaaatc
ctgaaatcttggcaagccaaaatgagcattctatttcttggatacaagcagttttctcag
atcgtttgcagtgatggtggtggcaacgtcgcagctgcgtgccgggacatgttgcttaag
gtccctagcctactgataatggatgagggccatacacctaggaatcgggagactgatgta
ctagagtcattgagcagagtccaaactccacgtaaggtggtcctatctggtacacttttc
cagaatcatgtcagtgaagtgttcaacatcttgaaccttgtacgcccaaagtttcttaag
tcggattcatctcgtcctattgttaaacgtataatgagtcaagtagcaatatcaggtggc
agaatttcaaaagggtctgctgataatgcattcactgagtcagtagaagagaccctgctg
catgatgataacttcacgagaaaagcacatgtcattagaagtctcagagaactaacaaaa
gatgtgcttcattactacaagggtgacatcttagatgaactacctggcctagtagacatc
agcgtcttcttgaaactcagtcccaagcagaaagaaattgttcataagttggaatcctat
gagaagttcaaaagaagcgccataggaactgcagtgtacatgcatccttgtctgtcagga
atgtcagaatttgatgctgcagatagggctatcaacctaacaaatgcaagcattgatagt
ttggttgagtcgatcaacgtgacagatggtgtgaaggccaggtttttcactaacatcctg
gcgcttgcgaattctgcaggagagaaggtgcttgcttttggtcagtacatactacccatg
aaatttttggagaggctattggtaaagacaaggggctggaatgtaggaaaggagatcttt
gtgatcaatggcgatactagtcaagaagagagagaactggccacggatcagtttaataac
tctgctgatgcaaaagttctgtttggctctataagggcatgcggggagggcatctccctc
gtgggcgcatcaagagttgtcattctagatgttcacttgaacccctctgttactcgtcag
gcaatcgggcgggctttcaggcctgggcagcagaagaaagtctttgtgtacaggctcgta
gccgctgactctcaagaggaaagcttccatcaaactgcattcaagaaagaagtcataccg
aagctgtggtttgaatggagtgagcagcactgcacgtcggacgacttccggctgaacaaa
gttgatatcgataactgtgaagatgagctgctggacaacagagcgatgcggcaggatatc
aaggtcctgtataaaaggtga
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