Hordeum vulgare subsp. vulgare (domesticated barley): 123426090
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Entry
123426090 CDS
T11213
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123426090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123426090
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123426090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Motif
Other DBs
NCBI-GeneID:
123426090
NCBI-ProteinID:
XP_044965801
UniProt:
A0A8I6X1S1
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Position
2H:281850932..281883370
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AA seq
388 aa
AA seq
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MFGTPNSPPLFGTPSFGTPSTTPAFGTPSSTPAFGAPSSTPAFGVPSSTPAFGAPSSTPA
FWTPTSSPTFGTPSSTPAFGAPPSPSPSPFGFQQQVNPSPSPFGFGGGAGGQITTQMAPV
APLPLSPSDRDIQAMVDAYKEEPGNPRYAFRHLLFSVTDPSQRVKPVAASDIMWAEAMGK
LECMDSADRERLWPQLVQGFKDLSCRLKLQDEVLVSDTERLSMTHSNVKKLQRHFQADTY
PWIQRLKHQELVIERRLLRIMRIVEALENRGFRVPLMKEEADLYERLVAIIKQIKGTGGD
LSKRAYNLLSTSRLLASTGCASGPIYIPNSTKVDKQNVSELLEALQQQTEAVAKLGNVLK
RDTRDVEIVLSEDTDMAEDSSRRRAFKM
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggacccccaactctccccctctcttcgggacgccctctttcggaactccctcc
actacccctgccttcggcaccccttcctccacgccggcatttggcgcgccgtcgtccact
ccggccttcggtgtcccttcgtccaccccagccttcggcgcgccctcctctacgccggcg
ttttggacacccacttcgagcccgacgtttggcacgccatcgtcgaccccggcgttcgga
gcgccgccgtcgccatcaccatcaccctttgggttccagcagcaggtgaatccatcccct
tcgccttttggtttcggcggcggggctggcgggcagattaccacccagatggccccagtt
gcgccgctgccactctcgccctccgaccgcgacattcaggctatggtggatgcgtacaag
gaggaaccaggcaaccctcgctatgcttttaggcatctgttgtttagcgtgacagatcct
tcacaaagggtgaagcctgtagcagcatctgatatcatgtgggcagaagcgatgggtaag
cttgagtgcatggatagcgcggacagggagaggctatggcctcaacttgtgcaggggttt
aaagatctctcctgccgtcttaagctccaagatgaagttcttgtttcagatactgaaaga
ttgagcatgacccactccaatgttaagaagctgcaaagacatttccaagctgacacatat
ccctggatccaacggttgaagcatcaagagcttgttattgagaggcgcctcctaaggatc
atgagaatagtggaggcgctggaaaaccggggttttcgtgttccattaatgaaagaggaa
gccgatttatatgaaagattggttgctataataaagcagataaaaggaaccggcggtgat
ctatcgaagagagcttataatcttctttcaacctcacgtcttcttgcaagcaccggctgc
gctagtggtcccatctatattccgaattcaaccaaagtcgataagcagaatgtttctgag
cttcttgaggcattgcaacagcagaccgaagcagttgcgaagttaggcaatgtattaaaa
agggataccagggacgtggaaattgtactttcggaagacacggatatggccgaagacagt
tccaggagaagggcatttaagatgtaa
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