Hordeum vulgare subsp. vulgare (domesticated barley): 123426134
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Entry
123426134 CDS
T11213
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123426134
03015 mRNA surveillance pathway
123426134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123426134
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123426134
5.6.2.5 RNA 5'-3' helicase
123426134
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123426134
mRNA cycle factors
Common to processing body (P body) and stress granule
123426134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
123426134
NCBI-ProteinID:
XP_044965849
UniProt:
A0A8I6WK37
LinkDB
All DBs
Position
2H:complement(300362642..300384763)
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AA seq
1268 aa
AA seq
DB search
MATQPPSPAAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARST
PPPPSTVTSPASSPWPAPPLPPDALPDADLAPQDSTPPASSSSPSPRSSASKVRTAAAAD
GLAAGVAALSFEEPPGAGTGDDGYDYGKGDFVEHACRYCGIHNPACVARCNMPSCRKWFC
NSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVV
VLLCREPCLNVNALKDMNWDLSQWTPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKV
EELWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQS
KDSVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLT
AQEEVALELRASQGVPVELNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLL
GHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIV
YHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVR
HLDTSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPR
LSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSL
FERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNR
PMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIV
NYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALT
RARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRR
LFLGGGQGVMQGSAFGSVGSVDKRSGRGKGHPFVPFGPPNGAHKPGVHPSGYPLPRMPYP
PFPGSPHSQPYAIPTRGSLHGPIGAVPAVPQPGSRSFGAPRANTGGPIGGHLAAHQQNSQ
QPMGNVGPTYNFAGDPSSQPSGGGLMSQSGLMTQMPVQGLSQTFRDGFTVGGMSQDLFGD
DFKSQGSHVAYNIADFSTQASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHIGATNDIV
SQDHMAHGSHSMFTQAGYNDPSQDESSQMHYGMAAPGHLQSQSMMNPMYSQSYAHYNTQP
QSLQPPPQ
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcagccgccttccccggctgctgcggccgccgacctctacgagacggcctcg
cagcccgacccctccgcctccgccgccggtgacgcatacaccttcctggagttcaacacg
cagggcgacgacttcgagtatcccgacttccctgagctctctcagcccgcgcgatccacg
ccgccgcccccgtccaccgtcacctctccagcctcttcgccctggccggctccgcccctg
ccgcccgacgctttaccggacgccgatctcgccccgcaggactcgaccccgcctgcctcg
tcatcctcgccgtcgccgcggtcgtcggcgtcgaaggtacggacggcggcggcggcggac
gggctggccgcgggggtcgcggccctcagcttcgaggagcctcctggcgccggaacgggg
gatgacgggtacgactatggcaagggagacttcgtggagcacgcctgccggtactgcggg
atccacaaccctgcatgtgtcgcgcgctgcaacatgccatcctgccgcaagtggttttgc
aactcgcgagggaacacctccggctcccacatcgttaaccacctggtcagagcaaaacac
aaggaagtttgtcttcacaaggatagccctctgggtgaaactattcttgaatgctacaat
tgtggctgccggaatgtatttctgcttggttttatctcagcaaaggcagagaatgttgtt
gttcttctgtgtagagaaccctgcttaaatgttaatgcattgaaggatatgaattgggat
ctcagtcagtggacacctcttattgatgacaggtgtttcttatcgtggcttgtcaaggtt
ccatcagaacaggagcagttgagagcacgccaaattagtgcccagcaaattaacaaagtg
gaagagctctggaaaacaaatcctgatgcctctcttgaagatcttgaaaaacctggtgtg
gacgatgaaccccagccggtggtcttgaagtatgaagatgcttaccagtatcaaaatgtt
tttgctccgctgataaagcttgaggctgattatgacaagatgatgaaagagtcacagagc
aaggacagtgtaactgtgaggtgggatattggactgaacaagaagcgcgttgcctatttt
gtcttcccaaaggaagataatgaattgagacttgtccctggagatgagctacgacttaga
tattccggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcact
gcacaagaggaggtagcacttgagcttcgtgctagtcagggagtacctgttgaactgaac
catggatttagtgtggattttgtttggaagagtactagctttgataggatgcaaggggca
atgaagacttttgctgtagatgagacaagtgtcagtggatacatatatcatcaccttttg
gggcatgaagttgagcatcagataatacgtaatacactaccgagacgctttggtgcgcca
ggacttccagagttaaatgcttcccaggtcttggctgttaaaagtgttctgcagaagccc
gttagtttgattcaaggtccacctggcactgggaaaactgttacatcagctgcaattgtg
taccacatggcaaaacaaggccaaggacaggtccttgtatgtgcaccaagtaatgttgct
gttgatcagttggcagagaagataagctcaacaggtctcaaggttgttagactttgtgcg
aaatctagagaagcagtttcttcacctgttgagcatcttacgctccattatcaggttcgg
catctcgatacttctgagaagagcgaaatgcataagctacaacaactaaaagacgagcaa
ggagaattgtcgagcagtgatgagaaaaagtacaaggcactaaaacgagcgactgaaaga
gagatattacaaagtgctgatgtgatttgttgcacctgtgttggcgctggagaccctcgt
ttgtcaaacttccgctttcgccaggttcttatcgatgagtctacacaggcgacagagcca
gaatgtcttattccattggttcttggtgttaagcaggttgttcttgttggagatcattgc
caattgggtccagttatcatgtgcaaaaaggcagcacgagcaggattagcacagtctctc
tttgagcgtcttgttatccttggagtcaagccattcaggctacaggtccaatatagaatg
cacccttgtctttcagaatttccatccaactgtttttatgaaggcacactgcaaaatggg
gtaactgtaaatgagagacagtcatcgggaattgactttccttggcctgttccaaatcga
cccatgttcttctatgtgcagatgggagtagaagagatcagtgctagtgggacatcttac
ctcaataggactgaagctgcaaatgtagagaaaattgtaactacattcttaagaagtggt
gttgtgccaagccagattggagttatcacaccttatgaagggcagagggcgtatatagta
aattatatgtcaaggaatggctctcttcgccaacagctttacaaggaaattgaggtggca
agtgttgactccttccagggaagagagaaagactacattattctgtcttgtgttagaagc
aatgaacaccagggtattggctttcttaatgatccacgcaggttaaatgttgcattaact
cgtgctaggtatggtatagtcgttcttggtaatcctaaagttctaagcaagcagcctctt
tggaatagtttattgacacattacaaggagcatgagtgcttggtagaaggacctttaaac
aatttgaagcagagtatggtgcaatttcaaaaaccaaaaaagatctacaatgatcgaaga
ctgttcctgggtggtggtcaaggtgttatgcagggatctgcctttggctctgtaggctca
gtagataagagaagtggtaggggaaaaggacacccctttgttccatttgggccaccaaat
ggggctcacaaacctggtgtgcacccatcaggctatcctttacctcgcatgccttatcct
ccatttcctgggtctccacattcacaaccctacgcaattccaactcggggatccctgcat
ggacccattggagctgttccggcggtgcctcaacctgggagtaggagctttggggctcct
cgtgcaaataccggtggccctattggcggccaccttgctgcccatcaacagaattctcag
caacctatggggaatgtggggccaacttataactttgctggtgatccgagcagtcagcct
tctggcggaggcctgatgtcccaatctggactgatgacacagatgcctgtccaaggtctt
agtcaaacattccgtgatgggtttaccgttggtgggatgtctcaggacttatttggagat
gatttcaagagccaaggatcccacgtggcatacaacattgcagatttttcgactcaggct
tctcaaggaggctatgctgttgaatatacacaagggcctcaatctggatatcctgggaat
tatttgaaccaaagtgcacatccagggtacccccatatcggtgcaacaaatgacattgta
tctcaggatcacatggcccatggttcacattccatgtttacacaagctggatacaacgac
ccatcacaagatgaatcttctcagatgcattatggaatggctgctcctggccatcttcag
tcacagagcatgatgaatcctatgtactctcagtcgtacgctcactataacactcaaccc
cagtctcttcagcctcctccgcagtga
DBGET
integrated database retrieval system
