Hordeum vulgare subsp. vulgare (domesticated barley): 123426147
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Entry
123426147 CDS
T11213
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123426147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123426147
03041 Spliceosome [BR:
hvg03041
]
123426147
03036 Chromosome and associated proteins [BR:
hvg03036
]
123426147
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123426147
Spliceosome [BR:
hvg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123426147
Complex B
123426147
Complex C
U2 SnRNP specific factors
123426147
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123426147
TFTC complex
123426147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
123426147
NCBI-ProteinID:
XP_044965856
LinkDB
All DBs
Position
2H:complement(307339523..307372146)
Genome browser
AA seq
1361 aa
AA seq
DB search
MESSASGDGASATKAAASAEAAVASSSSGPSTSASAFFADGAGGASATHYLAKRVLNGSA
VQHVARGHFRSEHLWEIVLCKGTSLELVVVGEDGVLQSICEQSTFGIVKDVGVLDWRFKH
FGIWPEIEGKEILVLLSDSGKLSLLYFCCQMHRFIPIGNIELSKPGNTRDQLGRILAIDH
DSAWVAISAYEDAFAVVRVGRTQHVYGPNKEIVEKAKIIHAVYKASDIRGTVWSMCFMRT
RCSMDEYYPVVAMIINRKGSDANDLSMYALAANDGGIQYLSSYSEPGPLALEIAEIPQLD
GFGLLFRAGDILIVDLRDPKDICCTIRISMTGSLVGEQISVEDSCRGLDVDDDVAACALL
ELRDSGNNIMMDDSYMAIDGADNPGSMKSRVVCSWSWEPDAIRGQPRLIFCLDDGEFHIL
EFNWDTEGLKVLPERVRRGLPCKPLLWMDRGMIAGFVEMGDGMILHLEHGGLVHKSTVQN
VGPMLDLAIADYHGEKQDQLFSCCGMCPEGSLRVIRNGVNVEKLLRTEPIYQGITGLWTL
RMKRTDTYHSFLVLAFVEETRILSVGLSFNDISDAVGFQPEVCTLACGLIADGLLVQIHS
KGVKLCLPTSYAHPEGATLTSPVCVDWYPDVTISVGAVGHDVVAVATSNPCCLYILRVRP
LSSLQYELYETQHVQLQYEVSCISIPEEDSRLRTPSSAIGGDFRERKGNNSVAEVNVRMF
AVIGTHKPSVEVISLEPDEAFRLLSTGSISVNNALGAPVSGCIPENVRVVASERFYILAG
LRNGMLLRFESGTSKDQYLPGSFYKESFAPSLNTLLQLVAIRHIGITPVGLVPLRDSANS
DIIVLSDRSWLLHASRHSLAYSSISFLPASHVIPVSSVDCPSGLLFVAENCLHLVEMVHG
KRLNAQKFSIGGTPRKVLYHSDSRTLLVMRTGLTGASCSSDIVQIDPNNGILLSRFKCEL
GETAKCIQIAKIGSEQVLIVGTSKSIDRPMMPNGEAEGSIKGRLIVLSLDTLGSPHECSS
FIPTSNLSSSSHTGSFPEIVGYANEEFSSNSMCSSPDDICYNQIQFEQIAGNLRSLTHVT
FTGAVLAVYPYLDRYVLAAAGNTLSVFGFVNENPHRMKKYAVSRTRFTITCLKTYASQIA
AGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDRCGSISVLSCPGL
EVSESPEKNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNCVVASTLLGSV
FVMIPLTSEEHQLLQDVQERLSLHPLTAPILGNDHAEFRRRGIPSGVPSILDGDMLVQFL
ELTSEQQQTVIDDGSSVKVPHRSISVFQVMRMLERVHYALN
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggaatcctccgcctccggcgacggcgcctctgccacgaaggctgctgcttctgcggaa
gcagcggtggcgtcgtcctcgtcgggcccctccacctctgcctccgccttcttcgccgat
ggcgccggtggggccagcgccacccactacctcgccaaacgcgtgctcaatggcagcgcc
gtgcagcacgtcgcccgtggccacttccgttcggagcacctttgggagatcgtcctctgc
aagggaacttcacttgaattagttgtggttggtgaggatggtgttttacagtcgatctgc
gagcaaagtacatttgggattgtaaaagatgttggtgtcttggactggcgctttaaacac
ttcggtatctggcctgagattgaagggaaagaaattctggttctactctctgattctgga
aagctttcccttctttacttttgttgtcagatgcataggtttattccaattggaaatatc
gagttatccaaaccaggaaatacgagggatcagctgggaagaattttggctatagaccat
gactctgcttgggttgctattagtgcgtacgaggatgcatttgctgttgtgcgtgttgga
aggactcagcatgtttatggtccaaataaagaaattgtagagaaggcaaaaatcatccat
gctgtatataaggccagtgatatccgcggtacggtttggagcatgtgcttcatgaggact
cgctgctcgatggatgaatattacccagttgtggcaatgataattaacaggaagggctct
gatgcgaatgacttgtcaatgtatgcactagctgccaacgatggtggcatccaataccta
tctagttactcagaacctggacctttggcgcttgagatcgcagaaattcctcagctggat
ggctttggacttctatttcgtgctggtgatattctaattgtggatcttagggacccaaag
gacatctgttgtaccattagaataagcatgacaggcagtctggttggagaacaaattagt
gttgaagattcatgtcgaggattagatgttgatgatgatgttgctgcttgtgctttgcta
gaactgagagattctggaaataacataatgatggatgacagttacatggctattgatggt
gctgataacccgggaagcatgaaatcaagggttgtttgctcatggagctgggagccggat
gccatccgaggacaaccaaggctgatcttttgcttggatgatggagaatttcatattctg
gaatttaattgggatactgaaggattgaaggtattgcctgagcgtgtccgtaggggtttg
ccttgtaaacctcttttatggatggacagaggaatgatagcagggtttgtagagatggga
gatggaatgatccttcatcttgaacatggtggactggtgcataaaagtacagttcagaat
gtaggaccgatgttagatttagcaattgctgactaccatggtgagaagcaggatcagttg
ttttcatgttgtggaatgtgtccggagggatcattgcgtgttataaggaatggtgtcaat
gtggagaaacttctgaggactgaacctatttatcagggtattactggtttatggacattg
agaatgaagagaactgatacatatcactcttttcttgtattggcatttgttgaggaaaca
cgaatactatcagtaggtctgagctttaatgacattagtgatgctgtcggatttcagcct
gaggtttgcactttggcatgtggtttaatagctgatggtttacttgtgcaaattcacagc
aaaggtgtaaagctttgtttgcctacatcatatgctcaccctgagggtgcgaccttaact
tctccagtttgtgttgactggtatcctgatgtcactatcagtgttggtgctgttggacat
gatgttgttgctgttgctacatcaaatccttgttgcctatatattctcagggtcagacca
ttatcttcactccaatacgagttgtatgagacacagcatgtccaattgcagtatgaagta
tcttgcatatccattccggaggaggactcgagacttagaacgccatcttctgcaattggt
ggtgattttagggagagaaaagggaataattctgttgctgaagttaatgttcgcatgttt
gctgtcattggaactcataaaccttctgtggaagtcatctcactggaacctgatgaagca
tttaggctgctctctactgggtctatatcagtgaacaatgcgctcggtgctccagttagt
ggctgtatacctgaaaatgttcgcgttgtagcatctgagaggttctacattctcgcaggt
ctaagaaatggcatgttactcaggtttgagtcaggaacaagcaaagaccagtatctccct
ggttccttttacaaggagtcttttgcaccttctcttaatactctccttcagttggttgct
ataaggcatattggaattacccctgtaggcttggtgccattgcgtgattcagctaattct
gacattattgttctcagtgataggtcttggctattacatgctagtagacacagcttggca
tattcatccatctcatttctgcctgcgtcccatgtgattccagtatcttctgtggattgc
cccagtggtctgctatttgttgcagagaactgtttacatttggttgaaatggttcatggc
aaaagattaaatgcacaaaagttttcaattggagggactccaaggaaagtgctataccac
agtgatagtagaacactgttggttatgagaactggtttaactggtgcatcatgttcttca
gatatcgtccaaatagatcctaataatgggatcttgctttcccgattcaagtgtgaactt
ggtgaaactgcaaaatgcatccagattgcgaaaataggaagtgagcaagtgttaattgtt
gggacaagtaaatctattgacaggccaatgatgccaaatggcgaagcagaaggcagtatc
aaaggacgcttaattgttctaagcttggatactcttggaagtcctcatgagtgcagttca
tttattccgacttctaatttgagttcctcttctcatacgggctcattccctgaaattgtt
ggatatgcaaatgaagaattctctagcaacagcatgtgcagcagtcctgatgatatttgc
tacaatcagattcaatttgaacaaatagcaggaaacctgagatcactgactcatgttacc
ttcactggtgcagttcttgctgtatatccatatctagatcgatatgtgttggcagcagcc
ggtaatacgctttctgtatttggttttgtgaatgaaaatcctcatcgtatgaagaaatat
gccgtgagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgca
gcgggcgattgtcgtgatggtgttctcttctattcttatcacgagaatcttaggaagttg
gaacttgtttatgctgatcctgctcaacgattggtgggtgatgttgtcctcttagactgt
gaaactgctgttgtgtcagatcgatgtggtagcatatctgtattatcctgccctggactg
gaagtttctgaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaa
atagctatgagcatccagaaggctgcatttaagtatcggctatcaattggtgatgagaca
gacccagtgttggaatcagcttataactgtgttgtggcgagtactttgctggggagtgtt
tttgttatgattccactcaccagtgaggagcatcaactgttgcaagatgtccaagaaaga
ctttcacttcacccattgactgctccaatcttgggaaatgaccatgcagagtttcgtcga
cgtggtatcccgtcgggagtgccttcaattctggatggtgacatgctcgtgcaattctta
gagctcaccagtgagcaacagcaaactgttattgatgatggttcttcagtaaaggtaccg
cacaggtctatctcagttttccaggtcatgcgaatgttggagcgggtccactatgcgcta
aactga
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integrated database retrieval system
