Hordeum vulgare subsp. vulgare (domesticated barley): 123426779
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Entry
123426779 CDS
T11213
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123426779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123426779
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123426779
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
123426779
NCBI-ProteinID:
XP_044966600
UniProt:
A0A8I6WEV0
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Position
1H:complement(120653925..120657777)
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AA seq
419 aa
AA seq
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MEIQTSGKPIDMLMEKVLCMNILSSDYFKELYRMKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK
DDEEFSPGSNGRMTTMGVFVRDLILGQYYFDSILPRVPVPVVRQVTANLEKMKLPTKLSG
VTGDSRHGSEDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRRTVTQDDQRRSSSPFR
RSASREGPYSDRSIHDREGNRSSRDRDTDHSSRDRDTVRSSRDRDTGRSSRDRDTGLSSR
DRERDYDRDSRDCDYYRFRHSEEKRNYRSEHDNSRHRRSSSCHRSRSRSRSRSRSRNEHR
SSPFGDTSKEKAAAASSNLAKLKDLYGDVAEKKDDGDARRLHHDSCAEEVIRLGGPRWR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacttcaggaaagcccatcgatatgttgatggagaaggttctttgtatg
aatattctttcttctgattacttcaaggagctctacaggatgaagacctatcatgaggtc
attgacgagatctataaccaagttgatcatgtggagccttggatgactggcaattgcagg
ggtccttccactgcattttgtctcctgtacaagttcttcacaatgaagcttactgtgaaa
cagatgcatggtttgttgaagcatcctgactccccgtacattagagctataggatttttg
tatcttcgatatgttgcagatccaaagatcctatggacatggtatgagccctacttgaag
gatgatgaggaattctcccctggatctaatggtcgcatgacaaccatgggtgtatttgtg
cgtgatcttatacttggacagtactactttgatagtatccttccaagagttcctgttcca
gtagttcgtcaagtaacagccaatcttgagaagatgaagctgcctaccaagctttctggg
gtgactggagacagtcgccacggatcagaggatactgcccgtcgccccccttctgttaaa
gcttctttgtcagtttcttttggacagcgtgcgccacaccgtgcttccacacgggattct
tccccagtgcgacgaacagtcacccaagatgatcaacggagatcatcttccccatttcgt
cgtagtgcaagtcgggaggggccttacagtgaccgttcaattcacgaccgagaaggtaac
cgttcaagccgtgaccgagatactgaccattcaagccgtgaccgagatactgtccgttca
agccgtgaccgagatactggccgttcaagccgtgaccgagatactggcctttcaagccgt
gacagagagcgtgattatgaccgtgacagcagggattgtgactattacaggttcaggcat
tcagaagaaaaaaggaattaccgaagcgaacatgacaatagtagacacagacgctccagc
tcatgtcataggagcagaagccggagtcggagcaggagcaggagcaggaatgagcatcgt
tccagtccatttggggatacaagcaaagagaaggctgctgctgcctcgagcaacctagct
aagctgaaagacctgtacggcgacgtagctgagaagaaggatgatggtgatgccaggcgg
cttcaccatgattcatgtgccgaagaggttattaggttgggaggccctaggtggagataa
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