Hordeum vulgare subsp. vulgare (domesticated barley): 123426834
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Entry
123426834 CDS
T11213
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123426834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123426834
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123426834
mRNA degradation factors
5'-3' decay
Lsm complex
123426834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
123426834
NCBI-ProteinID:
XP_044966663
UniProt:
F2DVZ6
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All DBs
Position
2H:498931616..498934605
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AA seq
128 aa
AA seq
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MSWAGPDEILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEL
YCDVPLGLYVIRGENVVLIGELDREKDELPSHMTCVSEAEIRTAEKAEKEARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggccgggcccgacgagatcctcctctccacctccctggccggcttcttagat
aaaaaactgattgtcctgctacgagatggacgaaagctgcttggcactctctgctcattc
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagttattgtgggcgaatta
tattgtgatgttcctcttggtttatatgtgatccggggagagaatgttgtattaattgga
gaactggatcgtgagaaggacgaactccctagccacatgacttgtgtttcagaggctgaa
ataagaacggccgagaaagccgaaaaggaagcaagggatctgaaaggcacaatgaggaag
aggatggagttcctagactttgattag
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