Hordeum vulgare subsp. vulgare (domesticated barley): 123427772
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Entry
123427772 CDS
T11213
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123427772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123427772
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123427772
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
123427772
NCBI-ProteinID:
XP_044967822
UniProt:
A0A8I6XGR3
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Position
2H:complement(609914591..609920346)
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AA seq
681 aa
AA seq
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MPRKVVSGPDYDDDYADYEDYEDDYDDDYDETGHADVKPPVKEKESLKNSSNAVPVLWKC
SMCTFDNHETMVYCEMCGVFRESFVKSGKDGSIKVDSVNGISNNSGTSALSNSDSTKMPA
KTSTTNFDGDSERKYASTSHDKVNSAQLASVGSSSSTGKKKQPIISDKDVPVERTPQLIA
DHFQLKEDQGSRVSCSAQNKGSMETLSSDISELSIERHNVNVAPPYLPEEYKPEGWMLAD
QESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGKISKRDMHKNEKEAKEKGKGSFAYAWA
MDESTEERARGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDAS
TGSFESGMDGDGGKNVGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKDRLEFIKVQLGS
FLRSCNFRDSAVTWIPLSAVENQNLIKSPSDARFTSWYQGLCLLDAIDSLQLPSRDVSKP
LILPICDVIKSQSTGQLAAFGKLETGAIRNGSKVLVLPCEQVATVKTIERDSSSCSTARA
GDNVAVILQGIDGNRIIPGGILCHPGFPVPVANYLELKIRVLDITIPILVGYQVEFHIHH
VKEAARVTKIVALLDKTGKPSKTAPRFLKSKQNAVVQVTLDQAVCVEEFSKCRALGRAFL
RSSGSTIAVGIVTKIMRQDQH
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggtcgtctccgggcccgactacgacgatgactacgccgactacgaggat
tatgaggacgactatgatgatgattatgacgagaccgggcacgccgacgttaagccgcct
gtgaaggaaaaagaatcattgaagaattcctcgaatgcagtgcctgtgctttggaagtgc
tcgatgtgcacatttgataatcatgaaactatggtatactgtgagatgtgtggggttttc
cgggaatctttcgtcaaatctggcaaggatggttcgatcaaagtagattctgtcaatgga
atatcaaacaattctgggacatccgcactgtcaaactccgattctaccaagatgccagcg
aagacttctactacaaactttgacggtgattctgagagaaagtatgctagcacatcccac
gataaagtcaattccgcacagttggcatctgtcggtagctcatcaagcactggaaaaaag
aaacaacccataatctctgacaaagatgtgcctgtcgagaggacacctcaattgattgct
gatcattttcagctaaaggaggaccagggtagtagggttagctgttctgctcagaataag
ggttccatggagacactttcttctgacataagcgagttaagtatcgaaaggcataatgta
aatgttgcaccaccttacttacctgaagagtataagcctgaggggtggatgctggctgat
caggagtccggggtgctgagccaactaaaccttgcaatagtgggtcatgttgattctggc
aagtcaacactctctgggagattgctacacctattagggaagatatcaaaaagagatatg
cacaaaaatgagaaggaagctaaggaaaaaggaaaggggtcatttgcttatgcatgggcc
atggatgagagtactgaagaaagagccagaggtgtcacaatgacagtggctgtcgcctat
ttggagaccaagaaataccgtgtagttttgcttgactctcctggccacaaagatttcgtg
ccaaatatgatatctggtgcgacacaggctgatgcagctattcttgtggttgatgcatca
actggttcttttgaatctggtatggatggggacggagggaaaaatgttgggcaaacaaag
gagcatgctcagcttattagaagctttggtgttgagcaacttattgttgcagtcaacaag
atggatgctattgggtactcaaaagataggttggagttcatcaaggtacaacttggtagt
tttttgcggtcatgcaacttccgagattcagctgttacctggattcctcttagtgctgta
gagaaccagaatttgattaaatctccttcagatgctcgttttacctcctggtatcaaggg
ttgtgtctcttggatgccatagattccttgcagcttccttctcgggatgtttcaaagccc
ctcattcttcctatatgcgatgttatcaaatctcagtcgacaggacaactggcagctttt
ggaaaattagaaactggcgctattcgaaatggttcaaaggtcttggtcttaccttgtgag
caagtggcgacagtgaaaaccattgaacgagactctagttcatgcagcacagcgagagct
ggtgacaatgtagcggttattttacagggaattgatggtaatcgaataatacctggcggg
attctttgtcaccctggtttcccggtgcctgtagccaactacttggagcttaagattcgg
gtgctggacatcaccattccaattcttgttggttatcaggtggagtttcacatacatcat
gtgaaggaagctgcaagagtaacaaaaatcgtggcgttgcttgacaagacaggcaagcca
agtaaaacagcaccgcggtttcttaaatcaaagcagaatgctgttgtgcaggttacacta
gatcaagcggtctgtgttgaggaattctcaaaatgccgagctcttggaagggcattcttg
aggtcgtctggaagcacgatcgctgttggtatagtgactaagataatgaggcaggaccag
cactag
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