Hordeum vulgare subsp. vulgare (domesticated barley): 123428344
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Entry
123428344 CDS
T11213
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123428344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123428344
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123428344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Vps36-NZF-N
Zn_ribbon_RanBP
AAA_22
Motif
Other DBs
NCBI-GeneID:
123428344
NCBI-ProteinID:
XP_044968480
UniProt:
A0A8I6WKH4
LinkDB
All DBs
Position
2H:646259953..646265399
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AA seq
682 aa
AA seq
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MFVPKTDNKSDLEGPHRNAGPWLCSICSQQNDTSFISCEVCGVLRDLSLYFNNANEAEGG
AKRRNKHSGVSVLARSLFTPSGPKSKVVVFSDGLQRNENATGHMQASLGTLHKTYMAHNQ
RRSIVPFKFDIPSPDDMVSTGLKSSRHLQKDITGKKVMADDDLVAEKDTSTDPSSSVKLD
ELGGKSSSVAANTQYETLILDNELQHLSLERKPKNSKAKIKKPIPVSQYKPEPWMLQGED
QEMPRQLNLAIVGHVDSGKSTLCGRLLHALGRITKKQMHKNEKEAKEKGKGSFAYAWAMD
VSADERARGITMNVGVAYFDTKNYQVVMLDSPGHKDFVPNMISGVTQADAAVLVVDASLG
SFESGMGVNGVGQTKEHSQLIRSFGVENLIVAVNKMDSVEYSAERFSYVKSQLGIFLRSC
GYKESAITWVPLSAMENENLVTAASDTRLSSWFHGTCLLEAIDSSAAPHRDVSKPLRLPI
CDVISSHVLGQVAVCGKVVCGAIRSDSKVLVMPCGELATVKIIERDSSRLSSARAGDNVA
IGLQGIDPIHVMSGGVLCHPDYPVCVASSLELKILVLDITVPILPGLQFELHVHHAKVSA
SLVRIVSLLDQKTGKASARKPRMLTARQAAIVEVKLEREVCVEEFGTLKALGRAFLRSHG
STVAVGVVTRVVRAQEERAGQA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcctaaaacagataacaaatctgaccttgaggggccacatagaaatgctggg
ccatggctgtgctccatttgctctcagcaaaatgatacgagttttatatcctgtgaggta
tgtggcgttcttcgggatctgtcgctgtatttcaataacgccaatgaagctgaaggtgga
gctaaacgcagaaacaagcactctggcgtatctgtactggcaagatctcttttcacacca
tctggtccaaaatcaaaagttgttgtcttctctgatggacttcagcgcaacgaaaatgca
acaggacacatgcaagcttccttgggtaccctgcacaagacatacatggcacataatcag
cgtcgtagcatagtgcctttcaagtttgatataccatctcctgatgacatggtctccacg
ggcttaaaatcgtccagacatttgcaaaaagatatcactggaaagaaggtgatggctgat
gatgatcttgtagctgagaaggatacaagtacagacccaagttcatcagtgaagctggat
gaacttggtggaaagagtagcagtgttgccgccaatactcagtacgaaactcttattttg
gacaatgagctacaacatttgagtttagagaggaagccaaaaaacagtaaagccaagatt
aagaagccaattcctgtttcacagtacaagccagaaccatggatgctacagggcgaagat
caagaaatgcctagacaactaaatcttgctattgttggtcacgtcgattctggcaaatca
acattatgtggtcggttgctgcatgctctggggagaattacaaaaaagcaaatgcataag
aatgagaaagaagcgaaagagaagggaaaagggtcatttgcatatgcttgggcaatggat
gtgagtgctgacgaaagggcacgtggcattacgatgaatgtcggtgtagcatactttgac
accaaaaattaccaagttgttatgctcgactcccctggtcacaaagatttcgttcctaac
atgatatctggagtgacgcaagctgatgcagcagtcctagttgttgatgcctctctagga
tcattcgagtcaggtatgggcgttaatggggttggtcagacaaaggagcactcacagctt
attcgaagctttggtgttgagaacttgatagttgctgttaataagatggattcagtggaa
tattcggcggaacgcttcagttatgtgaaatcacaacttggcattttcctccgatcatgt
ggatataaagagtcagcaataacctgggttcctttgagtgcaatggaaaatgaaaatctg
gtgacagcagcttcagatactcgtctctcatcatggtttcatgggacttgccttctggaa
gcaattgactcgtcagcagcacctcatcgtgatgtttcaaagccactgcggcttccaatt
tgtgatgttatctcatcccatgtgctggggcaagtggcggtttgtggtaaagtagtgtgt
ggagcaatcagaagtgattccaaggtccttgtgatgccttgtggagagctagctacagtg
aaaatcatcgagcgggactcctctcgcctcagctcggctagagccggcgacaacgttgcg
attgggctgcaagggatcgaccctatccatgtgatgtcgggtggagtcctgtgccatcca
gattaccccgtgtgtgtggcgtcttccctggagctgaagatcctggtgctagacatcacc
gtacccatactgcccggccttcagtttgagctccacgtgcaccacgcgaaggtgtcggcg
tccctggtgaggatcgtatcgctgctggaccagaagaccggcaaggcctcggcgaggaag
ccgcggatgctcaccgcgaggcaggccgccatcgtcgaggtgaagctggagagggaggtg
tgcgtggaggagttcggaacactcaaggccctcggccgcgcgttcctgcggtcgcatggc
agcaccgtcgcggtcggcgtcgtgacccgcgtcgtgcgggcacaggaggagcgagcaggg
caggcttag
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