Hordeum vulgare subsp. vulgare (domesticated barley): 123429162
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Entry
123429162 CDS
T11213
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123429162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123429162
Enzymes [BR:
hvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123429162
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123429162
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123429162
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
123429162
NCBI-ProteinID:
XP_044969161
UniProt:
F2EF82
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Position
1H:223253337..223263153
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AA seq
605 aa
AA seq
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MLSVVRVHLPSEIPIVGCEITPYVLLRLPNGAISTDDVPETAAVDGHFMRYRWYRIQSDR
KVAICSVHPMEQATIQCLGCLKSKIPAAKSYHCSAKCFSDAWQHHKVLHERASSALNENG
AEEEELFGRFGSGSSGILSSGSGSMSNLGQSPGVNNGPVPLYPSGSDKTSGETWFEVGRS
QTYTPTADDIGHVLRFECAAVDTEKKVPAGPPTSIMTSRVIPAPTPTPRHLIQVNGDVLG
HLDMDSQSSSFGTFTVLSYNILADAYATSDAYSYCPTWALSWTYRRQNLMREIIGYHADI
ICLQEVQLNHFEDFFAPEFDKHGYQALYKKRTTEVYAGVPHAIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTDAIIPPAQKRVALNRLIKDNIALIAVLEAKFGNQGTENPGKRQLLCV
ANTHVNVHQDLKDVKLWEVQTLLKGLEKIANSADIPMLVCGDFNSIPGSTPHGLLAIGKV
DQLHPDLAIDPLGILRPVSKLTHQLPLVSAYSSFARMVGVGYDLEHQRRRMDSGTNEPLF
TNCTRDFTGTVDYIFYTADSLSVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRIRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtggtacgggtgcacctgccgtcggagatcccaattgtggggtgtgagatc
accccttatgtgctgctgcgtctgcccaatggcgccatctccactgacgatgtgcctgag
accgctgctgttgatggtcacttcatgcgatacagatggtaccgcatacaaagcgatcga
aaagttgctatctgcagtgtgcatccaatggagcaagcaacaatccagtgtctaggctgt
ctcaagtcaaaaatacctgctgctaagagctaccattgttctgctaagtgcttctctgat
gcgtggcagcaccacaaggttttgcatgagcgagctagtagtgctttaaatgaaaatgga
gctgaagaggaggagctatttggtagatttggcagtggtagttcagggattctcagttct
ggatctggctcaatgtcaaatcttggacagagccctggtgttaataatggacctgttcct
ttgtatccctccggctctgacaaaacctctggtgaaacttggtttgaagtgggacgctcg
cagacatatacaccgactgctgatgatattggccatgttctgagatttgaatgtgcagcg
gtggatacagaaaagaaagtaccagcaggaccaccaacttcaattatgacgtcacgtgtg
attccagcaccaacccctactccacgccaccttatccaagtgaatggagatgttttgggt
cacttggatatggacagccagagttcttctttcgggacattcacagttctgtcttataat
attcttgcagatgcatatgctacaagcgatgcatatagctactgcccaacttgggctctt
tcatggacttatcggagacaaaatttgatgcgtgaaattattggttatcatgctgatatc
atttgtcttcaggaggtacaattgaaccacttcgaagatttttttgcacccgagtttgat
aaacatggatatcaggcgctttacaagaaaaggacaacagaggtgtacgccggagttcct
catgccattgatggctgtgctactttcttccgtagagacagattttcgcacgtaaagaaa
tatgaggtcgagttcaataaggctgcacagtctttaacagatgcgattattccacctgca
caaaagagggtggctttaaatcgattgattaaagataacattgcactgattgcggtctta
gaagccaaatttggcaaccaaggaactgaaaaccctggtaaaagacagctcctttgtgtg
gccaatacacatgtaaatgtccaccaagatctcaaagatgtcaagctatgggaggttcaa
acacttttaaaaggattggaaaagatagctaacagtgcggacattccaatgttggtctgt
ggggatttcaattcaatccctgggagtactccacacgggcttcttgcgataggcaaagtt
gatcaattgcatccagatctggccattgacccccttggaattttacgccctgtgagcaag
ctgacacaccagcttcctctggtcagtgcatattcttcatttgcaaggatggtaggtgtc
ggttatgatttggagcaccagcggaggaggatggactcaggaacaaatgaaccacttttc
acaaattgcacaagggatttcactggtactgttgattacatattttacacagcggattcg
ttgtcagtggagtctttattggagcttctggatgaggagagcttaagaaaagacactgct
ctcccttcacctgaatggtcgtcagatcacatagcactcttagcagaattccgttgcaag
cctagaatcagacgatga
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