Hordeum vulgare subsp. vulgare (domesticated barley): 123429569
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Entry
123429569 CDS
T11213
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123429569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123429569
04121 Ubiquitin system [BR:
hvg04121
]
123429569
03036 Chromosome and associated proteins [BR:
hvg03036
]
123429569
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123429569
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
123429569
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123429569
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
123429569
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
123429569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-HC5HC2H_2
PHD_NSD
BRCT_2
Motif
Other DBs
NCBI-GeneID:
123429569
NCBI-ProteinID:
XP_044969531
LinkDB
All DBs
Position
2H:63487244..63493134
Genome browser
AA seq
703 aa
AA seq
DB search
MWRWWLATVLTLWSWWSRVVLAVWLLWRRRRFRRLNGQEMGTTSAARTGMLVDVKIQAGY
ADLESLRNAGNRNASPAKGRKRKFGVDATKGESAGVNASNTGEHLRSCRKGKGQGKHARL
VDKEGATGLGRVQTPTGVYEDECAFCHSFRTSEPLHGPMVLYHNGRIVSADDGHPTNAIY
VHHKCMVWAPKVKSNGDTFENVEDEIKRGSGWDCSRCQLKGAALGCYVRGCPNTYHAPCA
LLIPECRWDEENRYVWCPKHAPPDEMSPPTNESAILSPVLQNQSLAKEISADCQMEDNQI
DALLGNEMSSPIIESDIPSPVLQNHSSNCPAKEISINRRMEDKQINPLLGNEMCSPIVES
NIPTAVLQNHSSNRPAKEISADCQMEDKQFNPLITSNSPLPGQVHRQLAKEGISALHRGQ
NLQIDQPNTSSSSLPQGQCSDKEGISTNYQREEKLVNQSSIPVDQWVLLGVALSASEKDA
LKEFASLTSSILAEEWDKTVTHVIVGRDAGSACGRSHEVLLAILSGKWVLAAGWVVDCLV
KRIPGPKPCLAKLIPSPEISYEVKFFDGLRTSIDGPTKGRARAAEGARKLFSGLRFCLSA
FMHPEDRKNIQNLIAAGEGQVLEGMSPDWLRENLNRNPAEVYFIYDGGPPRKPTLDFDLE
VQETVEYVESGAQVIRHQQLFDAILSYDRRILEPISFFTKIRK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgatggtggttagcgacggtcttgactctgtggagttggtggtcaagggtggtg
ttggccgtgtggctattgtggcgacggcgccgtttccgccgtctaaacggtcaagagatg
ggtaccacgtccgctgctcgtaccggcatgctggtcgacgtgaaaatacaagccggctac
gctgatcttgagtctctgcgaaatgctgggaatagaaatgcatcccctgcgaaaggccga
aagaggaaattcggtgttgatgcaaccaaaggtgaatccgcaggtgttaatgcaagtaac
accggggagcacctgcgttcctgcagaaaaggcaagggtcaggggaaacatgccaggttg
gtagacaaagaaggtgctactgggttggggagagttcaaacaccaaccggtgtatatgaa
gatgagtgtgctttctgccattcatttagaaccagtgagccgttgcatggtccgatggta
ctgtatcacaatggaaggattgtgtccgctgacgacggccaccctactaacgccatatat
gtccaccacaaatgcatggtttgggccccaaaagtaaaatccaatggggatactttcgag
aacgtggaggatgaaatcaagcgtggttcaggatgggattgcagcagatgccagctcaag
ggagcagcacttggttgttatgtcagggggtgccccaatacttatcatgccccatgtgca
ttgctgataccagaatgtcgctgggatgaagagaatcgctatgtttggtgtcccaagcat
gcaccacctgatgagatgagcccgccaacaaatgagagcgccattctttcccccgtcctt
caaaaccaaagtctagctaaagaaatttccgccgattgccaaatggaagataaccaaatt
gatgcattactgggcaatgagatgagctcaccaataattgaaagtgacattccttcccct
gtccttcagaatcattccagcaattgtccagctaaagaaatttccatcaatcgccgaatg
gaagataagcaaattaatccattgctgggcaatgagatgtgctcaccaatagttgaaagt
aacattcctaccgctgtccttcagaatcattccagcaaccgtccagctaaagaaatttct
gccgattgccaaatggaagataaacaatttaatccactcatcacatcaaattctcctttg
cctggacaagtgcatagacaattagctaaagaaggaatatccgcccttcatagagggcaa
aatctacaaatagatcagccgaacacctcgagttcttccttgcctcagggccaatgttca
gacaaagaaggaatttctactaattaccagagagaagaaaagctagtaaaccagtcgagc
atccctgtggatcagtgggttttgctcggcgtagctttaagtgcatcagaaaaggatgcc
ttgaaggaatttgcatccttgaccagttcgatcttggctgaggaatgggacaaaaccgtg
actcatgttattgtgggcagagatgctggttccgcatgtggcagatcacatgaggtcctg
ctggcgatactgtctgggaaatgggttctcgcagccggatgggttgtggattgcttggtg
aaaaggattccaggtccaaagccttgcttggcaaagctgattccaagcccggaaatttct
tatgaggtgaaattctttgatggtttgcgcacatcaattgatggaccaacgaaaggaaga
gctagagctgctgaaggggcacgaaaactgttctcaggactgcgtttctgcctcagcgcc
ttcatgcacccagaagacagaaagaacatacagaatctcatagcagctggtgaagggcaa
gtactggagggaatgagcccagactggttacgtgagaatctgaacagaaatccagcagag
gtgtacttcatctacgacggcggccctccaaggaagcccactttggattttgatcttgag
gtgcaggagaccgtcgagtatgtggaatcgggagcgcaggtgattagacaccagcagctg
ttcgatgctatcctgtcctacgatcgacggatcctagaacctatcagtttcttcaccaag
atacgtaagtga
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