Hordeum vulgare subsp. vulgare (domesticated barley): 123429672
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Entry
123429672 CDS
T11213
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
hvg03015
mRNA surveillance pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123429672
09122 Translation
03013 Nucleocytoplasmic transport
123429672
03015 mRNA surveillance pathway
123429672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123429672
03041 Spliceosome [BR:
hvg03041
]
123429672
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123429672
Spliceosome [BR:
hvg03041
]
Complex C
Other components
EJC/TREX
123429672
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
123429672
NCBI-ProteinID:
XP_044969618
UniProt:
A0A287HII4
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Position
2H:complement(86537898..86543882)
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AA seq
783 aa
AA seq
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MSTYPVLNDQPIDQWKFTELKDELSRRNLSTDGLKDDLVKRLFEELQGDILGGEGPVGGS
PPDDDLKEDETPGSADASVCQAAMEQNVDEGPSQVAPLEGDPVVSVTEASDKSADATTEV
SQDAVVSTEEVSHTTLVAEASEKSAVATAEVSQDAVVSTEEVSQTTLVAATEVCDAPLVD
ETAYEISPSDAVVTNGDHLESAPIGSNVVKEASPQADCHSEIIAEKAPEEGTIKKVIATC
DVAGTDVKLDATSANGKLDADIVEQDAVSSPPDASPSHLDPLDVDAVAAAPGQSAETLIP
VIDLNDNALMNGNDLEDSQRTNSTCKPTVAGTKDQVTEANPVLGSQIKCVLIPHNNISTN
VKGDLNADNSDLEIEIKRNMVKPPCNIPSISDGMQALDDDNELSKDGTPLQEIESETNII
LDKKEDSPDGTFPEKLVDRSSMEEDVMESKHVNPVIRSDDLGGKTVVVTSDHEEVKEVIL
FNTVANDSSVETMDIVHEEKPVTSSEKRKLEDQEVVADEPIKRQCNVDTLKIPKQQTSKL
SSSDSPKVVVQPALKHFVGRSDSTPSGGSHKERIVPLSQKPATTSLKVDRFVRPFTLKAV
QELLGRTGSVCSFWMDDIKTHCYVTYSSVDEAVATRNAVYNLQWPLNNGSYLAAEFVDPL
EVMLKIEHPPPPPPPTSLSKDTSPNAVAFQQVKDNQTMLPHGAGTSRGLSPTPQPHKKLF
PTSNPEPEREMLPSPPKKPGTTIKTLDDLFKRTQASPMIYYLPLSDEEVSAKLAACSRRM
RRH
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtatcctgtgctgaatgaccagccaattgatcagtggaagttcacggaactg
aaagatgagctctctaggaggaacttatctaccgatggcttgaaggatgatctcgtgaaa
aggctctttgaggaacttcagggtgatatacttggtggagaagggccagttggtggatct
cctcccgatgatgatctcaaagaggacgaaacccctggttcggctgatgcatctgtttgc
caggctgcgatggaacaaaatgttgatgaaggtccttctcaggttgcacctctggaagga
gatcctgttgtttctgttacagaggctagtgacaaaagtgctgatgctactacagaagtt
agtcaggatgctgtagttagtaccgaggaagttagtcacacaactcttgttgcagaggct
agtgagaaaagtgccgttgctactgcagaagttagtcaggatgctgtagttagtactgaa
gaagttagccagacaactcttgttgctgctactgaagtttgcgatgctcctcttgttgat
gaaacagcgtatgaaatttctccaagtgatgcagtggtaactaatggagatcacctagaa
tcagctccaattggtagtaatgtagtgaaggaagcgtctccacaagctgattgtcatagt
gagattattgcagagaaggctccagaagaaggcaccatcaagaaagtgattgctacatgt
gatgttgccggtactgatgtcaagttggatgcaacttctgctaatggcaagttagatgct
gatattgtagagcaagatgcagtatcatcacctccagatgctagtccgtcacatcttgat
ccattggatgttgatgctgttgcagctgcaccaggacaaagtgctgagaccctgattcct
gtgatagatttgaatgataatgctttgatgaacggcaatgaccttgaagattctcagcgc
acaaacagtacctgcaaaccaaccgtggcagggacaaaagaccaggtaactgaggccaac
cctgttctaggttctcaaatcaagtgtgttctgattccgcataacaatatatcaactaat
gtaaaaggtgacctgaatgctgacaattctgatttggaaatagagattaagaggaatatg
gtcaaaccaccatgcaacattccctccataagtgatggtatgcaggcattggacgatgac
aatgagttgtctaaggacgggaccccattgcaagaaatagaatctgaaaccaatattatc
ttggacaagaaagaggacagtcctgatggcacttttcctgaaaaactggtagacaggagc
tcgatggaggaggatgtgatggaaagtaagcatgttaatcccgttatcagatctgatgat
cttggaggaaagactgtggtggttacctcagaccatgaagaggtaaaagaggtgatcctc
tttaatactgttgccaatgattcatctgtggagacaatggatattgttcatgaagagaag
ccagtaacttcatccgaaaagaggaaacttgaagaccaagaagtagttgcggatgagccc
atcaaacgtcagtgcaatgtggatactctcaaaattcctaagcaacaaacatccaaacta
agtagctcagattctccaaaggttgtggttcagcctgccctaaaacattttgttggcagg
tctgattcaacaccaagtggaggttctcacaaagaacggatagtgccactttctcagaag
cctgcaacaacttccttgaaagttgatcgatttgtgcgcccatttactttgaaagctgtg
caagagcttcttggtagaactggatctgtttgcagcttctggatggatgatatcaagacc
cactgctatgttacatactcttcagtggatgaagctgtggctaccaggaatgctgtttac
aacctccaatggcccctaaacaatggcagttacttagctgccgaatttgttgatccactt
gaggtgatgctcaaaattgaacaccctcctccaccgccaccgcctaccagcctcagcaag
gatacatctccaaatgcagtagccttccaacaagtgaaggataaccaaaccatgcttccg
catggcgccggtacctcaaggggcctgtcacctactccacaacctcataaaaagttgttt
cctacctctaaccccgagccagaaagggagatgctcccatcccctccaaagaaacccgga
acaactatcaagacactcgatgatctattcaagaggacacaggcctctccgatgatctac
tacttgcccttgtcagacgaggaggtgtcagccaagcttgcagcatgcagcaggcgaatg
aggagacattag
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