Hordeum vulgare subsp. vulgare (domesticated barley): 123430364
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Entry
123430364 CDS
T11213
Name
(RefSeq) nuclear poly(A) polymerase 4-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123430364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123430364
Enzymes [BR:
hvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
123430364
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
123430364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
123430364
NCBI-ProteinID:
XP_044970164
UniProt:
A0A8I6XBC1
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Position
2H:507472300..507473889
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AA seq
527 aa
AA seq
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MASPISLVGPTPADLESTAQLEKHLRQAGLYESAEETAAREDVLRDLQGVVDRWVKRLTT
QREYPDGMAEHATALLLPFGSYRLGVHGRGSDIDALVVGPAYVDRHHDFFDVLGGVLAET
EAVTELQLVPGAYVPVIKMRFRGVQVDLLYASVCLPVVPSDLDLHGRSVLRGLDMATVRS
LNGVRVADEIIRLVPDAGAFRTTLRCVKHWAKARGIYSNAMGFIGGVGWAILVARVCQLY
PNAAPSMLVPRFFRIFSQWKWPNPVMLREIEHDDDGGEMPLGLPVWDPRRNPRDGSHLMP
VITPAYPCMNSCYNVSRATLRTMTTEFDAAHKACQEIAAAGAWDALFRPFNFFKAYSNYL
RVDVKVAGGEEDLREWKGWVESRMRQLVVRVEMATAGMLLCHPHPQAYAAKPHEDDRRRA
SSFFVGLSKPAPSPLQQQQQQPQFDLRLTTQEFKDEVYTYAFWRPGMELDVAHTRRKDLP
PYVLEQILSTDRLKRKRSDDDSDKPESSPVKRAAAAGRIGSSPESET
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccatctccctcgttggcccgacgccggcggacctcgagagcacggcgcag
ctcgagaagcacctgcgtcaagctggcctgtacgagagcgctgaggagacggctgcccgc
gaggatgtgctgcgcgacctccagggcgtcgtcgaccgctgggtgaagcggctcacgact
cagcgagagtaccccgacggcatggccgagcatgcgaccgctttgctcctccccttcggc
tcgtaccgcctcggcgtccatggccgcggctccgacatcgacgccctcgtcgtcgggccc
gcctacgtcgaccgccaccacgacttcttcgacgtgctgggcggcgtgctggccgagact
gaggctgtgacggagctacagctggttcccggcgcgtacgtgccggtcatcaagatgagg
ttccgcggcgtgcaggtggacctcctctacgccagcgtctgcctccctgtggtgccgagc
gatctggacctgcacggccgctccgtgctccgcggcctggacatggccaccgtccgcagc
ctcaacggcgtccgcgtcgccgacgagatcatccgcctggtcccggacgccggcgccttc
cgcacgacgctgcgctgtgtgaagcattgggccaaggcgaggggcatctactccaacgcc
atgggcttcatcggcggcgtggggtgggccatcctcgtggcgcgcgtgtgccagctctac
cccaacgccgcgcccagcatgctcgtgccgcgcttcttccggatcttctcgcagtggaag
tggcccaacccggtgatgctgcgggagatcgagcacgacgacgacggcggcgagatgccg
cttgggctccccgtgtgggacccgcggaggaacccccgcgacgggagccacctcatgccc
gtcatcacgccggcatacccctgcatgaactcgtgctacaacgtctcccgcgccaccctg
cgaaccatgacaacggagttcgacgccgcgcacaaggcttgccaggagatagccgccgcc
ggcgcgtgggacgcgctcttcaggccgttcaatttcttcaaggcgtacagcaactacctt
cgggtggacgtgaaggtggccggcggggaggaggatctccgggagtggaaggggtgggtc
gagtcgcggatgaggcagctggtggtcagggtcgagatggccacggccggcatgctgctc
tgccatccgcacccgcaagcctacgccgccaagccccatgaagatgatcggcggcgcgcg
tcgtccttctttgtgggactgtcaaagccggcaccgtcgccactgcagcagcagcagcag
cagccgcagttcgaccttcgactgacgacgcaggagttcaaggacgaggtgtacacgtac
gcgttctggaggcctggcatggagctggacgtcgcgcacacccgaaggaaggacctgccg
ccctatgtgctggagcagattctctccactgatcgtctcaagaggaaacgctccgatgat
gattccgacaagcccgagtcgagcccggtcaagagggcggcggcagcaggcagaatcggg
tcttcaccagagagcgagacttga
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