Hordeum vulgare subsp. vulgare (domesticated barley): 123430509
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Entry
123430509 CDS
T11213
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
hvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123430509
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123430509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123430509
04121 Ubiquitin system [BR:
hvg04121
]
123430509
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123430509
Enzymes [BR:
hvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123430509
Spliceosome [BR:
hvg03041
]
Complex B
Other components
Prp19 complex
123430509
Complex C
Prp19-CDC5 complex
123430509
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
U-box type E3
123430509
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
123430509
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Aladin
CFAP251_N
Beta-prop_EIPR1
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_SPT8
NBCH_WD40
ASA1
Beta-prop_DCAF4
eIF2A
PEP5_VPS11_N
Beta-prop_VPS8
PAN2_N
KNTC1_N
Beta-prop_NWD2_C
PAS_11
zf-Nse
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
123430509
NCBI-ProteinID:
XP_044970314
LinkDB
All DBs
Position
1H:260372225..260382669
Genome browser
AA seq
565 aa
AA seq
DB search
MICASKLFWLSPPSFIFFKTLAVRSGYPCANSSCVASTLVPEVSGEVPDEPVVSKRSGLL
FERRLVERYIEDHGKCPVTKEELSMDDIVLVKTNKVVRPRPLQAASIPGLLGIFQNEWDA
LMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRALLALAERQIPASMAG
VAPAAVVSNGKRAMEDEIGPDGKKIRPGINPVMIDELTECNTMLSAQRKKRQVPPSLASI
DELEKYTQISSHPLHKTNKPGILSMDIHPSKDIVATGGIDTNAVLFDRTSGQILCTLAGH
SKKITTLKFVPRDELVVTGSADKTVRIWQGTEEGNYSCIHTLKDHTAEVEAVTVHATQKY
FVTAAKDNTWCFYDISTGSCLSQVGEASGQEGYTSASFHPDGLILGTGTTEAVVKIWDVK
TQSNVAKFEGHTGPVTAMSFSENGYFLATAALDGVKLWDLRKLRNFRTFSPYDSDTPTNS
VEFDFSGTYLAVAGSDIRVYQVANVKTEWNLIKTLPDVSGTGKVTSAKFGTDAKYIAVGS
MDRNLRIFGLPGDDQMDDDAKSSAE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgatctgcgcaagtaagctcttttggctcagtcccccatcctttattttcttcaaaacc
ctagctgtacgatccggctacccgtgcgctaattcgtcttgcgttgcttctacgcttgtg
cctgaagtctccggcgaggtgcctgatgagccggtggtatcaaagaggtcggggctcctc
tttgagcggcggctcgtcgagcgctacattgaggaccacgggaagtgtccagtcacgaag
gaggaactctccatggacgacatcgtgctggtgaagaccaacaaggtcgtgaggcctagg
cctctgcaggctgcaagcattcccggactccttggaatctttcaaaacgagtgggatgcc
cttatgctttctaattttgctttggagcagcagcttcacacagcaagacaagaactgagt
catgcgttataccagcatgatgctgcctgccgtgttatagccagattaaagaaggaaaga
gatgagtctagagcgcttttggctctagctgagagacagattcctgcgtcgatggcggga
gttgcacctgcagctgtcgtttccaatggaaaaagagcaatggaggatgaaattggccct
gatgggaagaagatacgccctggtatcaatcctgtcatgatcgatgaactaacagagtgt
aataccatgctttctgctcagcgtaagaaacggcaggtaccaccaagtttggcatcaatt
gatgaactagagaaatatactcagatctctagtcatccactccacaagacaaacaagcca
ggcattttatctatggatatccatccgtcaaaggacatagttgcaactgggggtatcgat
acgaatgcagtgctatttgataggacatctggtcaaatcctgtgtacacttgctggtcac
tccaagaagataaccactttgaaatttgttccacgggacgagcttgtggtaactggatca
gcagataagactgttcggatttggcaagggactgaggagggaaactacagttgcatccat
acattgaaagatcataccgctgaggttgaagctgttactgtgcatgcgactcagaagtac
ttcgtgaccgctgccaaggataatacttggtgcttctatgatatttcaactgggtcttgc
ctctcacaggttggcgaggcttcaggacaagagggatatacatctgcatctttccaccca
gatggtcttatccttggaacaggaactactgaagccgttgtcaaaatttgggatgtgaag
actcagtccaatgttgcaaagtttgaggggcatactggacctgttactgctatgtccttc
tctgaaaatggttacttcctggcgactgctgctcttgatggtgtcaaactttgggatcta
agaaaattgagaaattttaggactttctcgccatatgattcggacacgccgacaaattct
gtggaatttgattttagcggcacctatcttgctgttgctggttcagatattagggtatac
caagtagctaatgtcaagaccgaatggaatcttatcaagaccttaccagatgtatcagga
acagggaaagtgacctctgcgaagttcggcactgatgctaaatatatcgccgtcggctct
atggaccgtaacctgaggatatttgggcttcctggagatgatcaaatggatgatgatgca
aaatcatcggccgagtga
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integrated database retrieval system
