Hordeum vulgare subsp. vulgare (domesticated barley): 123439647
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Entry
123439647 CDS
T11213
Name
(RefSeq) cell division control protein 48 homolog D-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hvg
Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123439647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123439647
03009 Ribosome biogenesis [BR:
hvg03009
]
123439647
04131 Membrane trafficking [BR:
hvg04131
]
123439647
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hvg04147
]
123439647
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123439647
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123439647
Membrane trafficking [BR:
hvg04131
]
SNARE
SNARE associated proteins
Others
123439647
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123439647
Exosome [BR:
hvg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123439647
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_33
AAA_5
AAA_14
CDC48_2
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
Parvo_NS1
AAA_18
ABC_tran
ATPase_2
nSTAND_NTPase5
AAA_7
NB-ARC
Viral_helicase1
NACHT
ResIII
TsaE
IstB_IS21
Zeta_toxin
DUF815
AAA_24
Vps4_C
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
123439647
NCBI-ProteinID:
XP_044972271
UniProt:
A0A8I6XWT7
LinkDB
All DBs
Position
3H:117193022..117195620
Genome browser
AA seq
788 aa
AA seq
DB search
MAITASSKKAANRLVVEDASTNDDNSVCTLHPDTMEKLSLFKGDTVLLKGKRRHSTVCMA
LPDDTCEEHKMRINKVARSNLRVRIADVVSVHLCHDVKYARRVHILPLDDTVEGIAGNLF
DAYLKPYFVDAFRPVHKGDLFLVRGGMRSVEFKVMEIDPAADYCIVMPDTEIFCEGEPVK
REDEERLDDVGYDDVGGMGKPLTQIRELVELPLRHPQIFKSIGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP
NREKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEVLRIHTKNMKLDEEVNLEVIAKDTHGYVGADLAALCTEAALQCIREKMDVID
LEDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNVSWNDVGGLDGVKRELQE
TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGRMGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVD
LGALARFTAGFSGADITEICQRACKYAIREDIEKDMERQRMGQDTMEPDGGQEEEAAEIK
AAHFEESMKYARRSVSDADVRKYRAFAQTLQQSRGFGTEFRFPAQPHAAEAAVHTSAAAD
EDEDDLYK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcacggcgtcatcgaagaaggcggcgaaccggctggtggtggaggatgccagc
accaacgacgacaactccgtgtgcaccctccacccagacaccatggagaagctttcccta
ttcaagggcgacacggtgctgctcaagggcaagcgccgccacagcacggtctgcatggca
ctgcccgacgacacctgcgaggagcacaagatgaggatcaacaaggtggcccgctccaac
ctgcgcgtgcgcatcgccgacgtcgtgtccgtgcacctgtgccacgacgtcaagtacgcc
aggcgcgtgcacatcctcccgttggacgacaccgtcgagggcatcgcggggaacctcttc
gacgcctacctcaagccctacttcgtggacgccttccgcccggtccacaagggcgacctc
ttcctcgtgcgcggcggcatgcggagcgtcgagttcaaggtcatggagatcgaccccgcg
gcggactactgcatcgtgatgcccgacacggagattttctgcgagggcgagccggtcaag
cgggaggacgaggagcggctcgacgacgtcggctacgacgacgtgggtggcatggggaaa
ccgctgactcagatcagggagctcgtcgagctgccactcaggcatcctcagatcttcaag
tccattggcgtcaagcctcccaagggcatcctcctctacggccctcccggttccggcaag
acgctgatcgcccgcgcggtggccaacgagaccggggccttcttctttctcatcaacggc
ccggagataatgtcaaagatggccggagagagcgagagcaacctgaggaaggccttcgag
gaggccgagaagaacgcgccctccatcatattcatcgacgagatcgactccattgctccc
aacagggagaagactcacggcgaggtggagaggcgtatcgtttcccagctgctgacgctg
atggacggcatgaaggcccgcgcgcacgtcatcgtcatgggcgccacgaaccgtcccaac
agcatcgaccctgccttgaggcgcttcgggaggttcgatcgcgagatcgacatcggcgtg
ccggacgaggtcgggcgtctcgaagtgctccgcatccacaccaagaacatgaagctggac
gaggaggtcaaccttgaggtgattgccaaggatacgcacggctacgtcggcgccgacttg
gccgcgctctgcaccgaggcggcgctgcagtgcatcagggagaagatggacgtgatcgat
ttagaggacgacaccatcgacgccgagatcttgaactccatggccgtcaccaatgaccac
cttaagacggctctcgtcggcacgaacccgtccgcgctacgtgagaccgtcgtggaggtg
cccaacgtcagctggaacgatgtcggcggcctcgacggggtcaagagggagctgcaagag
accgttcagtacccggtcgagcacccagagaaattcgagaagttcggcatgtcgccgtcc
aagggcgtcctcttctacgggccaccaggatgcggcaagaccttgctggccaaggcgatc
gccaacgagtgccaggccaacttcatcagcatcaaggggccagagctgctcaccatgtgg
ttcggcgagagcgaggccaacgtgcgcgagatcttcgacaaggcgcgtcagtctgcgccg
tgcgtgctcttcttcgacgagctcgactccatcgcgacccagaggggcggcaggatggga
gacgccggcggcgcggcggacagggtcctgaaccagctgctcaccgagatggacggcatg
aacgccaagaagacggtcttcatcatcggcgccaccaataggccggacataattgactcg
gcgttgctccgtcccggccgcctggaccagctcatctacatccccttgccggacgaggcc
tcgcggcaccagatcttcaaggcatgcctcaggaagtctcccgtggccaaggacgtcgac
ctcggcgcgctcgcaaggttcaccgcaggcttcagcggcgccgacatcacggagatctgc
cagagggcgtgcaagtacgccatcagggaagatatcgagaaggacatggagaggcagagg
atgggacaagacaccatggagccggacggcgggcaggaagaggaggcggcggagatcaag
gcggctcacttcgaagagtcgatgaagtacgcgaggcggagcgtgagcgacgccgacgtc
aggaagtaccgggccttcgcgcagacgctgcagcagtctagggggttcggcaccgagttc
cgcttcccggcgcagccacacgcggcagaagctgctgtccacacctccgcggcagctgat
gaggatgaagacgatctatacaagtga
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