Hordeum vulgare subsp. vulgare (domesticated barley): 123439679
Help
Entry
123439679 CDS
T11213
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123439679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123439679
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123439679
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123439679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
SRP54
nSTAND3
nSTAND_NTPase5
T2SSE
Ig_NUP210_8th
Cas3-like_C_2
hNIFK_binding
AAA_16
Motif
Other DBs
NCBI-GeneID:
123439679
NCBI-ProteinID:
XP_044972306
UniProt:
A0A8I6WD60
LinkDB
All DBs
Position
1H:389855273..389859051
Genome browser
AA seq
1063 aa
AA seq
DB search
MASEERQLKTRVSDRLMALVGYSEVMVVRLVLRLARESASAADLAARLVDLAGLPSSADT
VAFAEDVHAMFPRKGSRVSEYRKQVQEAAAFAKKQSAFKLLDDEDDHAQDAGAIATATAS
SSNTSGKKRFRQNAASPGDDDEEEEGTVMRDSGRKVRAQRAPAEDGDGSDGEELEEMDRD
QIEKAQLDRHIRERDAASTRKLTDRKPTKREQGELGRRSEALDRGDTSELRTASRQAYLE
KRKKMKVEEMQDEIIDNEFIFDGVKMTNAEEMELRRKKEIYDLVKVSVGKDADADAGDYY
RMPDAYDAAANVDQAKRFAVQRQRYDDPEAAARDGKRSNFFSEQEAWEEQQIRKSRLHFG
SDDGGRAGGGYELVLEGVVDFVKSTVQAGAEPDGEMDELAEAIDAKVTLQRELQDERKNL
PVYKFKDDLLKAIDKYQVLIIVGETGSGKTTQIPQYLHEAGYTAKGKKIACTQPRRVAAM
SVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVIKYMTDGMLLREFLGEPDLASYSVVMV
DEAHERTLSTDILFGLVKDIARFRPDVKLLISSATLNAEKFSDFFDEAPIFKIPGRRYKV
DIHYTTAPEADYIAAAVVTVLQLHVTQPAGDILLFLTGQEEIETVEEMLKQKMRTFGGKM
AELVICPIYANLPTELQAKIFEPTPEGSRKVVVATNIAETSLTIDGIKYVIDPGFCKLKS
YNPRTGMESLRVEPISKASADQRAGRSGRTGPGKCFRLFTEYNFRNDLDDDTVPEIQRSN
LANVVLRLKALGINDLVSFDFMDPPASEALLKALEELFALGALNSRGELTKTGRRMAEFP
LDPMLSKAIVASEKYKCSEEVVTIAAMLSAGNAVFYRPKDKLVHADTARQAFHAGNVGDH
VALLNVYNAWKESGYSSQWCRENFVQPRTMKRARDVRDQLEALLERVEIEHCSGVGDLGA
ITKAVTAGYFRNAARRQKDGSYRAVKSRQTVFVHPSSGMAEVTPSWVVYHELVLTTKEYM
RQVTELKPEWLLEIAPHYYQRRDIDGHEPKKMAKGKGPAPAPL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgaggagcgtcagctcaagacgcgggtgtcggaccgtctgatggcgctcgtg
ggctactccgaggtcatggtggtgcgcctggtgctccgcctcgcgcgggagagcgcgtcg
gcggccgacctcgcggcgcgcctcgtcgacctcgccggcctcccctcctccgccgacacc
gtcgcgttcgcggaggacgtgcacgccatgttcccccgcaagggctcccgcgtcagcgag
taccggaaacaggtgcaggaggcggcggcgttcgccaagaagcagagcgccttcaagctg
ctcgacgatgaagacgatcacgctcaagatgccggcgccatcgccacggccactgcgtcg
tcctctaacaccagcggcaagaagcgcttcaggcagaatgccgcgagcccaggggatgac
gacgaggaggaggaggggactgtaatgcgcgattcagggcggaaagtgcgagcgcagcgt
gctcccgcggaggacggcgacggttctgatggggaggaactggaagagatggaccgtgat
cagatcgagaaggctcagctcgatcggcacatcagagaacgcgacgcagccagcactagg
aaactgacggatcggaagccgaccaagcgagagcagggcgagcttggccggcggtccgaa
gcgttggacaggggcgacacctcggagctcaggacggcctcgcggcaagcgtacctggaa
aagcggaagaagatgaaggtggaggagatgcaagacgagattatcgacaacgagtttatc
ttcgacggcgtcaagatgacgaacgccgaagagatggaattaaggcgaaagaaggaaatc
tacgaccttgtcaaggttagcgtcggaaaggacgccgacgccgacgccggcgactactac
aggatgcccgacgcatacgacgccgcagcaaacgtggatcaggcgaaacggtttgccgtt
cagaggcagcggtacgatgaccccgaggcggcggcgagagacggcaagaggagcaatttc
ttctcggagcaggaggcctgggaagagcagcagataaggaagtctcggctacacttcgga
tcagatgatggtggccgggccggcggcggctacgagctcgtcttggaaggcgtggtcgac
ttcgtcaagtcgacggtgcaggccggcgccgagccggacggcgagatggacgaacttgcc
gaggcaatcgatgccaaggtgacattgcagagggagctgcaggacgagaggaagaatctg
cccgtgtacaagttcaaggacgatcttctcaaggccatcgacaagtaccaggtgctgatc
atcgtcggagagaccggctccggcaagaccacgcagataccgcagtacctccacgaggcc
gggtacacggccaaggggaagaagatcgcgtgcacgcagccgcgtcgcgtcgctgcgatg
agcgtggcggcgagggtggcgcaggagatgggcgtcaagctcgggcacgaggtcggctac
tcgatcaggttcgaggactgcacctcagacaagacggtgatcaagtacatgacggacggg
atgctcctgcgggagttcctcggcgagccggacctggcgagctacagcgtggtgatggtg
gacgaggcgcacgagcgcacgctctccaccgacatcctcttcggcctggtcaaggacatt
gcgcgcttccggccggacgtgaagctgctcatctcgagcgcgacgctcaacgccgagaag
ttcagcgacttcttcgacgaggccccgatcttcaagatccccgggagacggtacaaggtg
gacatccactacacgacggcgccggaggcggattacatcgccgccgccgtcgtcacggtc
ctgcagctgcacgtcacccagcccgccggcgacatcctgctgttcctcacggggcaggag
gagatcgagacggtggaagagatgctgaagcagaagatgaggacatttggcggcaagatg
gcagagctggtgatctgcccgatctacgcgaacctgcccacggagctccaggccaagatc
ttcgagccgacgccggagggctcccgcaaggtggttgtggccaccaacatcgccgagacg
tcgctgaccatcgacgggatcaagtacgtgatcgacccggggttctgcaagctcaagtcg
tacaacccgcgcacgggcatggagtcgctgcgggttgagcccatctccaaggcgtcggcg
gaccagcgtgccggccggtcggggcggacaggacccggcaagtgcttccgcctcttcacg
gagtacaacttcaggaacgacctggacgacgacacggtcccggagatccagaggagcaac
ctggccaacgtggtgctgaggctcaaggcgctgggcatcaacgacctggtgagcttcgac
ttcatggacccaccggcgtcggaggcgctgctcaaggccctggaggagctcttcgccctc
ggggcgctcaacagccgtggcgagctcaccaagaccgggaggaggatggccgaattcccg
ctggaccccatgctctccaaggccatcgtggcgtcggagaagtacaagtgctccgaggag
gtggtgaccatcgcggccatgctatctgccgggaacgccgtcttctaccggcccaaagac
aagctggtgcacgccgacacggcgcggcaggccttccacgcgggcaacgtcggtgaccac
gtggcgctgctcaacgtgtacaacgcgtggaaggagtcgggctactcgtcgcaatggtgc
cgcgagaacttcgtgcagccgcgcaccatgaagcgcgcgcgggatgtgcgggaccagctg
gaggcgctgctggagcgggtggagatcgagcactgctccggcgtcggcgacctcggcgcg
ataacgaaggcggtcacggcgggctacttccgcaacgcggcgcggaggcagaaggacggg
tcgtaccgtgccgtcaagagccggcagacggtgttcgtgcacccgagctccgggatggcg
gaggtgacgccgtcatgggtggtgtaccacgagctggtgctgaccaccaaggagtacatg
cggcaggtgacggagctcaagccggagtggctgctggagatcgcgccgcactattaccaa
cgcagggacatcgacgggcacgagccaaagaagatggccaagggcaaaggtccagcgccg
gcgccgctgtag
DBGET
integrated database retrieval system
