Hordeum vulgare subsp. vulgare (domesticated barley): 123441568
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Entry
123441568 CDS
T11213
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123441568
04121 Ubiquitin system [BR:
hvg04121
]
123441568
Enzymes [BR:
hvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123441568
Membrane trafficking [BR:
hvg04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
123441568
Ubiquitin system [BR:
hvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123441568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_UBOX
zf-RING_11
zf-rbx1
zf-C3HC4
zf-ANAPC11
zf-RING_5
Zn_ribbon_8
Anti-TRAP
zf-Nse
Rad50_zn_hook
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
123441568
NCBI-ProteinID:
XP_044973895
UniProt:
A0A8I6WNW4
LinkDB
All DBs
Position
1H:9495565..9497317
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AA seq
401 aa
AA seq
DB search
MDSSPAATAPASYWCYSCDRFVRAAPAQDGADVACPGCGGGFLEEMRRNPPPPAAAAYLR
RPRAHHANDLRLRRSRRAAAAAAAASGGGGGGGGDRAPFNPVIVLRRSALGVPAGDESND
DDGALAAASSFELFYDDGAGSGLRPLPESMSDFLMGSGFERLLGQLAQIEAGGLTRSRET
PPASKAAVESMPTVAIAASHVAADCHCAVCKEPFELGAEAREMPCAHIYHEDCILPWLQL
RNSCPVCRHEMPTDTTSRPQAASAGAEEETTVGLTIWRLPGGGFAVGRFAGGRRPEEREL
PVVYTEMDGGFNHGGAPRRISWGSRQSRSTERSAIRRVFRNMFACFGRDHSASSHASSSH
MRPEEMTEASDHSAAFSHGSRSRSMSWRLEDGHAADTMVQR
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcccccgccgcgacggcgccggcgtcgtactggtgctacagctgcgaccgc
ttcgtgcgggccgcgccagcgcaggacggggccgacgtcgcctgcccgggctgcggcggc
gggttcctcgaggagatgcgccgcaacccgccgccccccgccgcggccgcctacctccgc
cgcccgcgcgcgcaccacgccaacgacctccgcctccgccgcagccgccgggccgctgcc
gcagccgcggcagcgtctgggggaggtggcgggggcgggggcgaccgcgcgccgttcaac
ccggtcatcgtgctccggcgctcggcgctcggcgtcccagcgggggacgagagcaacgac
gacgacggcgcgctcgccgcggccagcagcttcgagctcttctacgacgacggcgcgggc
tccggcctccgcccgctgccggagagcatgtcggacttcctcatggggtccgggttcgag
cgcctgctcggccagctcgcgcagatcgaggccggcggcctcacccggtcccgcgagacc
ccgccggcgtccaaggccgccgtcgagtccatgcccaccgtcgccatcgcggcctcccac
gtcgccgccgactgccactgcgccgtctgcaaggagcccttcgagctgggcgccgaggcc
agggagatgccctgcgcacacatctaccacgaggactgcatcctcccctggctgcagctc
cgcaactcctgccccgtctgccgccacgagatgcccaccgacaccacttcacggccacag
gccgccagcgccggggctgaggaggagaccaccgtgggcctgaccatctggaggctgccg
ggaggcgggttcgccgtcgggaggtttgccggcgggaggagacccgaggagagggagctc
ccggtcgtttacacggagatggacggcggtttcaaccacggcggcgcaccgaggaggatc
tcgtgggggtcaaggcagagccggtcgactgagaggagcgcaattcgacgcgtcttccgc
aatatgttcgcctgctttggccgcgatcattcggcgagctctcacgcctcgtcctcccat
atgaggcccgaggagatgaccgaggcgtcggatcattccgccgcgttcagccatggctcg
agaagccggagcatgagctggaggttggaagacggccacgcagccgacacgatggtgcag
agatag
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