Hordeum vulgare subsp. vulgare (domesticated barley): 123442223
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Entry
123442223 CDS
T11213
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg00040
Pentose and glucuronate interconversions
hvg01100
Metabolic pathways
Module
hvg_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123442223
Enzymes [BR:
hvg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123442223
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
RVT_2
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123442223
NCBI-ProteinID:
XP_044974209
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Position
3H:605137656..605183795
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AA seq
713 aa
AA seq
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MWDTTKEEEASYSDNEVCLLAGEESSSFVVAEKEQGWRETMDKEMQSIIANNTWELSELS
PGHRAISLKWVYKLKKGTQGAVVKHKARLVEKGYVQEQEVFALVAGMDSVRILIVLVAHH
GWQVHHMEVKSAFLKADLLEEVYVQQPPEYAVAGQEGKVLRLCKALYGLRQRPRAWNAKL
DESLCVVGFERCSSQHAVYQPGSGGSLLIVGVYVDDLIITGTARMEIDSFKQINLGKLSY
YLGSRFMEKPASDHYAVVKHLLRYVAGTLNHSCAYGRSEGTLQLTDYSGSDHSGDTDDKK
STTGVIFFLGRSPRMMGDRLLLLLVAFMALVTLTTATEYNVMEYGARPDGGTDSAGAFQA
AWGAACNDTGSSGSRPVLCVPAGRFLLSRAYFKGPCRSAGVVVAIDGNGTVFAPPAVDGR
AWIMFHHADGLAIHGGTLDGQGQEYWACKKAGRCTAGQGPRTLDISQSKGVSVKQMTLLD
SKEFHMVIFDCTNVTFQGVRIIAPADSPNTDGIHASRSRHVSILNTTIGTGDDCVSLGPG
TSDMLIRDITCGPGHGISIGSLGWQAGEEEVRNVTVDRAVLTGTTNGLRIKTWGTPNSGS
VVNVSFSRVTMQRVANPILVDQNYCPRKADCPGKSSGVQISNVSYTEIEGTSMTPVAVKF
NCSDTNPCSGINLRNIRLTYRHKRPAQAKCQNVGGSASGEMENICVKSQGYNF
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtgggacacaaccaaagaggaggaggcgagctacagcgacaacgaggtatgtctgctc
gcgggagaggaatcttcatccttcgttgtggcggagaaggagcaaggttggcgtgaaacg
atggacaaagaaatgcaaagcatcatcgccaacaacacctgggagctgagcgagctctca
cctggtcaccgcgcgatcagtctaaagtgggtgtacaaattgaagaagggcacccaaggc
gccgtggtgaagcacaaggcgcgcttggtggaaaagggctatgtccaagagcaagaggtc
ttcgcgttggtcgcaggcatggactcggtgcgcatccttatcgtgctcgtggcgcaccac
ggctggcaggtacaccatatggaagtcaagtcagccttcctgaaggccgacctgctcgag
gaggtctacgtgcagcagccgccggagtatgccgtggctggccaggagggcaaggtgttg
cgcctctgcaaggcgctatacggtctccgccaacggccgagggcctggaacgcgaagttg
gacgagagcctgtgcgtggtgggcttcgagcgctgttcgtcgcaacacgcggtgtaccaa
cccggctcaggtggctcgctcctgattgtcggagtctacgtagatgatctcatcatcacg
ggcacggccagaatggagatcgactccttcaagcagatcaacctgggcaagcttagctac
tacctgggatcgaggttcatggagaagcctgcctccgaccactacgccgtggtgaagcat
ctcttgcggtatgtggcggggacactgaatcacagctgcgcatatgggcgcagcgaagga
acgctgcagctaaccgactatagtggctcggatcactctggggacacggacgacaagaag
agcacgacgggtgtgatcttcttcctcggcaggagcccgaggatgatgggtgataggctc
ttgctgctgctggtggcgttcatggcactggtgacgttgacaacggcgacggagtacaac
gtgatggaatatggcgcaaggcccgacggtgggactgactcggcgggggcgttccaggcc
gcgtggggcgctgcgtgcaatgacacggggagctccggctcgcggccggtgttgtgcgtg
ccggcgggcaggttcctgctcagccgggcctacttcaaggggccctgccggagcgccggc
gtggtcgtggccattgacggcaatggcacagtcttcgctccgccggccgtggacggcagg
gcgtggatcatgttccaccatgccgacggcctggcgatccacggcgggacgctggatggg
caagggcaggagtattgggcgtgcaagaaggccggcaggtgcaccgccgggcaaggcccc
aggacgctggacattagccagtccaagggcgtgagcgtgaagcagatgacgctgctcgac
agcaaggaattccacatggttatcttcgattgcaccaacgtgacgttccaaggcgtccgg
atcatcgcgccggccgacagccccaacaccgacggcatccacgccagccgctcccgccac
gtgagcatcctcaacaccaccatcggcaccggcgacgactgcgtctccttggggcccggc
acctccgacatgctcatcagggacatcacctgcggtccgggccacggcatcagcatcggg
agcctgggatggcaggccggtgaggaggaggtgaggaacgtgaccgtggatagggcggtg
ctgacgggcacgaccaacggcctgcggatcaagacgtgggggacgcccaactccggctcc
gtcgtgaacgtctccttctcgagggtcaccatgcaacgcgtggccaaccccatcctcgtc
gaccagaactactgtccccgcaaggccgactgcccgggcaagagctccggggtgcagatc
agcaacgtgtcgtacacggaaatcgagggcacgtcgatgacacccgtcgcggtgaagttt
aactgcagcgacaccaacccctgcagtgggatcaacctcaggaacatcaggctcacgtac
cggcacaagcggccggcgcaggccaagtgccaaaacgtcggcgggtccgcgtccggagag
atggagaatatttgtgtaaaatcacaaggttataacttttga
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