Hordeum vulgare subsp. vulgare (domesticated barley): 123442278
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Entry
123442278 CDS
T11213
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123442278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123442278
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
123442278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
123442278
NCBI-ProteinID:
XP_044974250
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All DBs
Position
1H:complement(423598252..423605988)
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AA seq
1400 aa
AA seq
DB search
MQPPAPEEAPRAKRRRKGTTGADADGGGGSKGARPSKSETRPNRRGRPPRASGKSKEAEA
EAEADAPACGDWVEVPRCDGGGRRGDDASGDDNGESRADEACGIGQGSHEHRSAASGDRI
NEHRRSGAVNGSNSSHRGSEAVSGDADRGRLGAGFHGDEEHMNQQDTVDCGNRELPSEGD
AMGGEVAASEDDYEDDYDDEMLEERLVADLIRTYSNGDNLEASNGAYGNGGDLEESEDEM
GFTDDGDDDDFMHDADECGMSEPINDDAKAPINDDAKAGAQDPVDHKVVAGEVRCHEEDK
EEDVIKDEVETKQEGATGFSQGKSHIEILDSDEEVKVLNDASKASKRKPLLRKKEPVVPC
VAWRTRSLWGLKQDRMSYNAYFEELSDEPEEEDDSEVELDDEDGDSDDDDNSASHDSEVE
LEEEEAKMKAKEEEEAEMRKRKKEMASSSVKVRAGHLPLYMNNNRGKRIQKATPNRCNNS
KPGRRIQTHHRTDSSDDEIGDHTVADGFKWEVHKKPGIQPLNFDKDGSEGPVGNDITQHQ
KQSYFTWDLERRKRLKLETTTKERQLFERHLDSDSSPSSSDQNKRHGDDSKIGREKKHLS
SKSGKSAKKSSRLGAKTLKRQSLLKLLMDKMCSDKDGGFSPFEQHPQFDYNFKDPHPLVF
SFGTETSTPADIPEQSAKENMLWGDFDFALESENIGTYYDDEHQGESNVLDLGLPSKTPC
SRGKHEFIIDDQIGIRCKYCSLVNLEIRFVLPSMVSNYAEKTPWRNGSYLKEALMYHDLC
EQAGSVDGQSQDLHLYGTVWDLIPGVITSMYQHQREAFEFMWTNLVGDIRLDELKHGAKP
DVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWEEEFKKWDVNVP
FHIMNTTDYSGKEDRDICRLIKKEHRTEKLTRLVKLLSWNKGHGILGISYGLYMKLTSEK
KSGCTEGSKVRSILLENPGLLVLDEGHTPRNERSIMWKTLGKVKTEKRIILSGTPFQNNF
LELYNILCLVRPRFGEMFLTEKKVGRRHYVSKKRQDKFSDKYEKGVWASLTSNVTDDNAE
KVRSILKPFVHIHNGTILRTLPGLRESVIVLKPPPLQKSIIRKVENIGSGNNFEHEYVIS
LASTHPSLVTAINMSEEEASLIDKPMLERLRPNPYEGVKTRFVIEVVRLCEALKEKVLIF
SQFIQPLELIKEHLCKLFKWRVGKEILQMDGKIQPRYRQTSIEVFNNPDSDAKVLLASTR
ACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDR
QAEKDHLSKLVFSQEDEFNNVRNMLSKAEMDHCSKLISQDKVLEEMSSHDQLKSMFLKIH
YPPTESNMVFTYNQIAPELS
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgccggcgccggaggaggcgcccagggccaagaggaggaggaaggggacgacg
ggcgcggatgccgacggaggcggtgggagcaagggcgcccggccttccaagtcggaaacg
agaccgaatcgtcgtgggcggcccccgcgcgcctcggggaagagcaaggaggcagaggcg
gaggcggaggcggatgcgcccgcctgtggagactgggtggaggtgcctcggtgtgacggc
ggtgggcggcgaggtgatgatgcttccggcgatgataatggcgaatctcgcgccgacgag
gcatgcggcattggccaggggagccacgagcatcgcagcgccgctagtggggatcgaatc
aatgagcatcgtaggagtggggcggtcaatggttcgaattccagtcatcgtgggagtgag
gcggtatcaggcgatgcagacagaggtcggctgggtgctggttttcatggggacgaggag
catatgaaccaacaggatacagtggactgtggaaacagggagctgccgtccgagggggat
gccatgggtggggaggtcgcagcatctgaagatgactatgaagatgactatgacgacgag
atgttggaggaaagactggttgcagatctgatccgtacttacagtaatggtgataatttg
gaggcaagtaatggtgcttacggtaatggtggtgatttggaggaatccgaggatgagatg
ggattcactgatgatggtgatgatgacgattttatgcatgatgcagatgaatgtggcatg
tctgaaccaatcaacgacgatgctaaggcgccaatcaacgatgatgctaaggcgggagcg
caggatccggtggatcacaaggttgttgctggtgaggttaggtgccatgaggaggacaaa
gaagaagatgttatcaaggatgaggtggagacaaagcaagaaggagcgacgggctttagt
caagggaaatcgcatatagaaattcttgattccgacgaggaagtaaaagtgctcaatgat
gccagtaaggcctcgaagaggaaaccgttgctgcgaaaaaaggaacctgtcgtgccatgt
gttgcatggaggactcggtcattatgggggcttaagcaagataggatgtcgtacaatgcg
tattttgaggagttgtccgatgagccagaagaggaggatgattcagaagtggaactggac
gacgaggatggtgacagtgacgacgatgacaatagtgccagtcatgattcagaagtggaa
ctggaagaagaggaagcaaaaatgaaagcgaaagaggaagaagaggccgaaatgagaaaa
cgcaagaaagaaatggcctcatcttcggtaaaagtaagggcagggcatttgcctctttat
atgaataataatagagggaagagaatacaaaaagcaaccccaaacaggtgcaacaactca
aagccagggaggaggatacaaacccaccacagaactgactcatctgatgatgagataggt
gatcatactgtagcagatggtttcaagtgggaggttcacaaaaaaccagggattcaacca
ctgaactttgataaagatggcagcgagggtccagtgggcaatgacattacgcagcatcag
aagcagtcatattttacttgggatcttgagaggaggaaaaggctgaagcttgaaacgacg
actaaggaacgtcaattgtttgagcggcatttggattcggattctagcccatccagttcg
gatcagaacaaaaggcatggtgatgatagcaaaattgggagggaaaagaagcatttgtca
tcaaaatctggaaaatctgccaagaaatccagtcgtttaggtgcaaaaacgctaaagcgg
cagtcacttctgaagcttctgatggataaaatgtgtagtgataaagatggaggattctct
ccttttgagcagcatcctcagttcgactataatttcaaggatcctcatccattggtattc
tcatttggcactgaaacttctacaccagctgacataccagagcaaagtgccaaagaaaat
atgctatggggtgactttgactttgctttagaatcagagaatattggaacctactatgat
gacgagcaccaaggagagagcaatgtgctagatcttggactaccttctaaaacaccttgt
tctagagggaagcatgaatttattattgacgaccaaataggtatcagatgcaaatactgc
tccttggtaaatctggaaatcagatttgttttaccgtcaatggtctcaaattacgcagaa
aaaactccttggcgaaatggatcttatttgaaggaagcgttgatgtatcatgatctttgt
gaacaagctggaagtgttgacgggcaatctcaagatctccatctatacggaacagtatgg
gatctcatccctggtgtcattactagtatgtatcagcatcaacgcgaagcatttgaattt
atgtggacaaatctagtcggtgatattaggcttgatgagctgaagcatggagctaaacct
gatgttgttggaggatgtgtgatctgtcatgccccagggacaggaaagacacgtttagct
attgtttttatccagacatatatgaaggtatttccagactgccggccagtgattattgca
cctcgcgggatgctgtttgcttgggaagaggagttcaaaaaatgggacgtcaatgttcct
ttccatataatgaacactacagattattcagggaaagaagacagagacatatgtaggcta
ataaagaaagagcatcggacagagaagttgacgagacttgtaaaactgctttcatggaac
aagggtcatggtattcttggaataagttatggtttatatatgaaactaacatccgaaaaa
aaatctggctgcactgaagggagcaaagtaagaagcattcttctcgagaaccctggtttg
cttgtgctagatgaaggacacacacctaggaacgagcgcagtattatgtggaagacattg
ggaaaagttaaaactgagaagcgcataattctatcaggaactcctttccaaaataatttt
cttgagctttacaatatactctgtttggtaaggcccaggtttggtgaaatgttcttgaca
gaaaaaaaagtgggcagaaggcactatgtctcaaagaagcgacaggataagttttctgac
aaatatgaaaaaggagtatgggcttcattaactagtaatgtaactgatgataatgcagag
aaagttagatcaatactgaagccatttgttcatatccataatggcaccattcttcgaact
cttccagggctcagagagagtgtgattgttctgaaacctcctccccttcagaagagtatc
attagaaaggtggaaaatattgggtctggtaataattttgaacatgaatatgttatttcc
ttagcttctacacatccttctcttgtaactgccatcaacatgtctgaagaggaagcttca
ctcattgataaacctatgcttgagagattaaggccaaatccctacgaaggggttaaaaca
agatttgtaattgaagtcgttcgtttgtgtgaagcactgaaagaaaaggtattgatcttt
agtcagtttattcagccattagaattgataaaagaacacctttgcaagcttttcaaatgg
agagtagggaaagagattctccaaatggatgggaagatccaaccacgatatcgtcagact
tcaattgaagttttcaacaatccagatagtgatgcgaaggtgttacttgcatctacaaga
gcttgctgtgaagggattagcctaaccggagcttcaagagttgttcttctagatgtggtt
tggaatcccgctgtgggaaggcaagctatcagtagggcatttaggataggacagaagaaa
tttgtatatacatacaatttaataacttatggaacaggtgaaggtgacaagtacgatagg
caagcagaaaaggaccatttgtccaagttggtcttctctcaagaggatgagttcaataat
gtcaggaacatgctatcaaaagctgaaatggatcactgttctaagttgatatctcaggat
aaggttctggaggagatgtcctcccatgaccagctaaagagcatgttcttaaagatacac
tatccaccaactgagtcaaacatggttttcacttacaaccagattgcccctgagttgagt
taa
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