Hordeum vulgare subsp. vulgare (domesticated barley): 123442856
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Entry
123442856 CDS
T11213
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hvg03009
]
123442856
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123442856
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
123442856
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123442856
NCBI-ProteinID:
XP_044974961
UniProt:
A0A8I6X4S5
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Position
3H:38481991..38485456
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AA seq
643 aa
AA seq
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MASSSSPSPATAAARKRALTEQRFSDLTPALSPEVVEALDRGGFRRCTPVQAATIPLLLS
HKDVAVDAATGSGKTLAFVVPVVEMLRRLPSPPKPHQVLGIIISPTRELSSQIYNVAQPF
FATLKGVSSILLVGGLDIRVELEKVEKEGANILVGTPGKLFDIMERLDTLEYKHLEILIL
DEADRLLDMGFQKQVTSIISKLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVQVKIEAN
DAAQQDLGPSKTPLGLRLEYMICEPAKKSSQLVDFLVQNTGKKIMVYFATCACVDYWSVV
LPMLNLLKGSPVIAYHGKMKQGPREKALASFSSLSSGILVCTDVAARGLDIPHVDLIVQY
DPPQDPNVFVHRAGRTARYDQEGDAIVFLLPTEDAYVDFLKLRGVPLMERVCSPDIVDIV
PQIRAAALEDRNIMEKGLRAFVSFVRSYKEHHCSFIFRWKGLEVGKLAMEYGLLQIPSMP
EVKHNNLSLKGFFPLGNIDFSQIKFKDKIREKQRQKALKRKAEELANEPPVPEKRIPRER
PDKPKRKQTGKQRQTIQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTGFGGSDGEGSD
GDAAGKGKGKERRSKEQKKLKQRGGKTGGRRFEIKSKLKSKRR
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctcctccccctcgccggcgacggccgcggccaggaagcgcgcgctcacg
gagcagcggttctcggacctcaccccggcactgtccccggaggtggtcgaggccctggac
cgcggcggcttccggcggtgcacgccggtgcaggcggcgaccatcccgctgctgctttcg
cacaaggacgtggccgtcgacgccgccaccggctccggcaagaccctcgccttcgtcgtc
cccgtcgtcgagatgctccgccgcctcccttcgcctcccaagccccaccaggttcttggc
atcatcatctctccgacgagagaactgtcatcgcagatatacaatgtggcgcagcccttc
ttcgcgacgctgaagggcgtgtcgtccattctgctggttggtgggctggacatcagggtg
gagctcgagaaagtggagaaagagggagcaaacatactggtgggcactcccgggaagctg
ttcgacatcatggagcgcctggacactctggagtacaagcatcttgagattttgatcctg
gatgaggccgataggctcttggatatgggctttcagaagcaggttacctcaattatttca
aagttgccaaagctgagaagaactggccttttttcggccacccagacagaggctgtcgag
gagctggcaaaagcagggttgaggaatcctgtgagggtccaagttaagatagaggcgaat
gatgctgctcagcaagatcttggtccatccaagacgccgctggggctccggttggagtat
atgatatgtgaaccagcaaagaagtcatcacagcttgttgatttccttgtgcaaaacact
ggaaagaaaatcatggtctactttgcgacatgtgcttgtgtagattattggtctgttgtt
cttccaatgcttaacttacttaaagggtctccagtgatagcttaccatgggaagatgaaa
cagggcccacgtgagaaagctctggcatcattttcttctctttcaagtggcattttagtc
tgcactgatgttgcagcaaggggtcttgacataccacatgttgatctaattgtgcagtac
gatccacctcaagatcccaatgtgttcgtacatagagcaggtcgtactgcccgctatgat
caagaaggagatgctatcgtgtttctcttaccgacggaggacgcttatgttgatttttta
aagcttcgaggcgttcctctcatggaaagggtgtgttccccagatattgtagatattgtg
ccacagattagagcagctgcattggaagatcgtaatatcatggaaaaggggcttcgagct
tttgtctcatttgttcggtcatacaaggagcatcactgctccttcattttcaggtggaaa
gggcttgaagttggaaagctggccatggagtatgggttactccagatcccatccatgcca
gaagtgaagcacaataatctttcactaaagggattttttccacttggcaacatcgatttt
tcacaaatcaagttcaaggataaaattcgggagaaacagcgccagaaggcattgaaaaga
aaagctgaagaactagcaaatgagccgccagtcccagagaagaggatacctcgggagagg
cctgataagccgaagcgcaagcagacgggcaagcagcgccagacaatccagaccaaggag
gacatggatgagctgacgaacgagtaccgcctcctgaagaagctgaagcgtggagtgatc
gacgaagacgagtacgagaagctcaccgggtttggagggtcggacggtgaaggctcggat
ggggacgcggccggcaagggcaaaggaaaggagaggcgcagcaaggagcagaagaaactc
aagcagagaggaggaaagacaggaggcaggagatttgaaataaagagtaaactgaagagc
aagagaagatga
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