Hordeum vulgare subsp. vulgare (domesticated barley): 123442967
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Entry
123442967 CDS
T11213
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123442967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hvg03400
]
123442967
DNA repair and recombination proteins [BR:
hvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123442967
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
123442967
NCBI-ProteinID:
XP_044975098
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Position
3H:60285542..60295411
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AA seq
1220 aa
AA seq
DB search
MQPRRQQQSILSFLHPRQSPGQEALGAGATPERPPRPPAPSSVDGIMERLVRPPSQGRNK
DAAQIRNAERALPGKNEDTSNERSSAVFPVPYNGNYSRGTMLFAEHSMDTTPPQEPLKFT
ARSSTDEFVRASTLFPELGSDQTPLHVCPKKLSSERPNNQYAQDNSVFEAFDVQTPSQEP
LKRIFSGPFHGADTPLSEYRSYPIPLQHPSKKLSLGSSSGEYVRAVTPLRLDSNDTPTVK
HSKKLFSGSSDHSYIKATNLFAEFDSNGTPLQNHSNKFSVSMNGIGAPATLFPELDSVLL
KPETPVTRAAAPRGKRVQQDQCMTANNSHSPLWGSNKKVKSAHCSPAGKMVNDEMAESAR
SKFEWLNPLNIRDANKRRPGDPLYDKRTLFIPPDALRKMSTSQKQYWTIKCKFMDVLLFF
KVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDNAVEKLLARGYKVGRIE
QMESAAQAKVRGPNSVIERKLAHVSTPSTAADSNIGPDAVHLLALKEVTLASNGSRVYGF
AFLDYAALKIWVGSLQDDDSSAALGALLVQVAPREIIHEFSGLSRESRKSMIKYASAGSV
KMQLTPLPGTDFSDASQIQMLVHSKGYFKASTDSWSSALDYLENRDAVICALGGLIGHLT
RLMLDDALKNGEVLPYNVYQTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCITASG
KRLLRRWICHPLKDVDAINRRLDIVEGFIQHCGVGSITLEHLRKIPDLERLLGRVRSTIG
LTSAVLLPFVGDKILKRRIKTFGMLIKGLRVGIDLLSALRKDDHGIPALSKSVDIPTLSS
LDELVHQFEEAIRNDFEQFQDHDIKDDDAITLAILVELFVGKASEWSLVINAISTVDVLR
SFASMALSSFGTMCRPRILLKDKSPILRMKGLWHPYAFAESGTGLVPNDLSLGQDLSGHN
RFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCISCELTLADSIFTRLGATDRIMSG
ESTFLVECSETASVLQNATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEQVRCRLLFA
THYHPLTKEFASHPHVSLQHMACMLRPRSGGNGEMELTFLYRLASGSSPESYGLQVATMA
GIPKSIVEKAAVAGEMMKSRIAGNFRSSEGRAEFSTLHEDWLQTILAIGGVKDAHLDEDT
LDTMFCVAQELKSHFRKEGK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcggcggcagcagcagtccatcctctccttcctccacccgcgccagagcccg
gggcaggaggcgctcggcgccggcgcgacccccgagaggcccccgcgccctcccgccccg
tcgtcggtcgacggcatcatggagaggctcgtgcggccgccgtcgcaggggagaaacaaa
gatgctgcccagattagaaatgctgagagagccttacctggtaaaaatgaagatacctca
aatgagcgctcaagtgcagtattccctgtaccgtacaacggcaactatagcagaggaact
atgctatttgcagaacatagcatggataccactccgccacaggagccgttgaagttcacc
gcaaggtcttccacagatgaatttgttagagcaagcacactgttccctgaacttggttca
gatcaaactccgcttcatgtgtgtccgaagaagttatcatcagagcgcccaaacaatcag
tatgctcaagataattcagtttttgaagcatttgatgtacaaactccgtcccaggaaccc
ttgaagagaatcttttctggcccttttcatggagcagatacacctttatcagagtatcgt
tcatatccaattcctttgcagcatccatcgaagaagttgtcactgggctcttctagtggt
gaatacgttagagcagtgacaccgcttagacttgattcgaatgatacccctacagtgaaa
cactcaaagaagctattctctgggtcttcagaccattcgtacattaaagcaactaatttg
tttgcggaattcgattcaaatggaactccgctgcagaaccactcgaataagttctcagta
tctatgaatggtattggagcacctgctacactgtttccggaacttgattctgttcttcta
aaaccagaaactccagtgacacgagcagcggctcctcgtgggaagagagttcaacaggat
caatgcatgactgccaataacagccactctcctttgtggggttcaaataagaaggtgaaa
tcagctcattgttctccagctgggaagatggttaatgatgaaatggctgaaagtgcacgt
agtaaatttgaatggctgaatcctttgaatatcagggatgcaaataaaaggcgaccaggt
gacccactttatgacaagagaactctttttattccacctgatgcactgagaaagatgtca
acatctcaaaagcaatactggactattaagtgcaaatttatggatgttctcctcttcttc
aaagtggggaaattttacgagctgtatgaagttgatgctgagatcggtcaaaaggaactt
gattggaaaatgactattagtggggtgggaaaatgccgacaggttggtatttcagagagt
gggattgacaatgctgttgaaaagcttttagctcggggatataaagttggaaggatagaa
caaatggaatctgcagcacaggcgaaagttagaggaccaaattcagttatcgaaagaaag
ttagctcatgtatccactccgtcaactgcagctgacagcaacataggtcctgatgctgtt
catcttcttgcattgaaagaggttactctagcttctaatggttctcgggtctatggattt
gcttttctagattatgctgcccttaaaatctgggttggttcacttcaagatgatgattcg
tctgcagctttgggggctttgctggtgcaggttgccccgagggagataatccatgaattc
tcaggcctctcaagagaaagtcgtaaatcaatgataaaatatgcctcagcaggctctgtg
aaaatgcaattgaccccactacctgggacagatttctctgacgcttcacaaattcaaatg
ctagtacattctaaaggatactttaaagcatcaacagattcttggtcatctgcattggat
tatttggagaatcgagatgcagttatctgtgcacttggtggacttattggtcatttgact
agacttatgctagacgatgctctaaaaaatggggaagtcttaccttacaatgtgtaccaa
acttgtttgaggatggatggtcagactcttgtgaacctggaaattttcagcaataacttt
gatggtggctcatcaggtactctctacaagcacctcaatcactgcataaccgcatctggt
aagcggcttttaagaagatggatatgccatccactaaaagatgtcgatgctataaataga
aggcttgatattgttgagggtttcattcaacattgtggggtaggctctatcacacttgag
catctccgtaaaattcctgaccttgagaggttacttggacgagtcagatccactattggg
ctaacatcagctgttctcttgccctttgttggagataaaatattaaagcgacggattaaa
acgtttggcatgcttatcaagggcctccgggttggaattgacttattaagcgccttacgt
aaagatgaccatggcatcccagccctgtcaaaatcagttgatattccaaccctgagctct
cttgatgaattagttcatcaatttgaagaggctatacggaatgactttgaacagttccag
gatcatgatatcaaagatgatgatgctattaccttggctattttagtggagctttttgtt
ggaaaagcttctgaatggtctttggtaatcaatgccatcagtactgttgatgtccttagg
tcctttgcatcaatggcattgtcgtcatttggcaccatgtgcagaccccgtattctgttg
aaagacaaatcgcctatacttcggatgaagggtctatggcatccctatgcttttgcagaa
agtggaactgggcttgtaccaaatgatttgtctctcggtcaggatttatcgggtcataat
cgctttgcattgttgttgactggtccaaatatgggaggaaaatctacaataatgcgtgcc
acctgcttggcaattgtacttgcccagcttggctgttatgtcccctgcatatcatgcgaa
ttgacccttgcagactccatcttcacacgactaggtgcaacggatcggattatgtctgga
gaaagtacctttcttgtcgaatgtagtgagaccgcatctgttcttcagaatgcaacagag
gattctcttgtcttgcttgatgagcttggcagaggaactagcacatttgacggatatgcg
attgcatatgctgtattccggcaccttgtggagcaggtgcgatgccgtctgctcttcgcc
acgcactaccaccctctcacgaaggaattcgcctcccacccccacgtgagcctccagcac
atggcctgcatgctgaggccaaggagcggcggcaatggcgagatggagctcaccttccta
taccggcttgcgtcaggctcctccccggagagctacggcctgcaggtcgccacgatggcg
gggatcccaaagtccatagtggagaaggcggcggtcgcgggcgagatgatgaagtcgagg
atcgcggggaacttcaggtcgagcgaagggcgagcggagttctccaccctccacgaggac
tggctgcagacgatcctggccatcggcggcgtcaaggacgcgcacctggacgaggacacc
ttggacacgatgttctgtgtcgcccaggagctcaagtctcatttcaggaaagaaggaaag
tga
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