Hordeum vulgare subsp. vulgare (domesticated barley): 123443664
Help
Entry
123443664 CDS
T11213
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123443664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123443664
03009 Ribosome biogenesis [BR:
hvg03009
]
123443664
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123443664
Spliceosome [BR:
hvg03041
]
Complex A
U1 snRNP components
U1 related factors
123443664
Complex B
123443664
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
123443664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123443664
NCBI-ProteinID:
XP_044976080
UniProt:
A0A8I6X192
LinkDB
All DBs
Position
3H:complement(285189404..285194285)
Genome browser
AA seq
816 aa
AA seq
DB search
MSGTAAPRYAPDDPTVPKPWRGLVDGTTGYLYYWNPETNVTQYEKPVPPEAQLPPPPPLP
PPPPRARGRDRRDRSRSRSRSRSRSRTPPRRDHRDRDRRRHDEHDSFKSASSHHHLPPAA
TGIPTASADDPSAEAYRRRHEITVIGDNVPAPITEFDSGVIPLDILKEIQRAGFPSPTPI
QAQSWPIALLNQDVVAIAKTGSGKTLGYLLPGFMHIKRMQNSTRSGPTVLVLAPTRELAT
QILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLNDILEMRKISLKQ
VSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVRRIADELLVHPVQVT
IGSVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFCTTKRMCDQLSRTLN
RQFGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDIRVVINYDFPTGVE
DYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIKILEGADQDVPPELLDMVSRGGRGRK
RNKWAARSERGVGSCSELDSRYGGRLESSRGGHGKDDYGGRSRHDHGGSRRSGRGRSRSR
SRSDSDSRSPSPKRRRHDVLASRSRTRSRSRSRSRNKSRSRSRNRSRNKSRSRSRSYTRN
RRASRSRSRSPGARRRAERRAGSGSTRPDSVLPVEKKSSPSVDPSNDHRRGSVDPSNDYQ
VEDGKIGKVDLDRSPSPQEQDDKSAPYSPVYNGEGGRGSMSPNVEPVVDAKPVEVSVSST
KREDQEEGMIDEEGEEGMIADDDPRPSAAVQNGDDK
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaccgcggccccacggtacgcgccggacgaccctacggtgcccaagccgtgg
cgcgggctggtggacggcaccaccggctacctctactactggaatccggagaccaacgtc
actcagtacgagaagcccgtgccgccggaagctcagctcccgccgcccccgccgctcccg
ccgccgcctccgcgcgcccgcggccgggatcgtcgagaccgttcccgatctcgctcccgc
tcccgctcccgttctcgcacaccgcctcggcgcgaccaccgcgaccgcgaccggcgccgc
cacgacgaacatgactcgttcaaatcggcgtcttcccatcaccatcttcctccggctgcc
accggcatccctaccgcatcagctgatgatccatcagccgaagcataccgccgtcgccat
gagatcacagtcatcggggataacgtgccggctcccataactgagtttgactctggtgtc
atcccgctggatatactcaaggagatacaacgtgccggattcccgagtccgacacctatc
caagcccagtcgtggccaattgccttgctcaatcaagatgttgtagctattgccaagaca
ggatctggaaaaactcttgggtatttgcttcctgggtttatgcatataaagcgtatgcag
aacagcacaaggtctggcccaacagtgttggttttggcacctactagagagctcgcaaca
cagattttggaagaagctgtgaaatttggcagatcatcaagaatttcttctacgtgcctt
tatggtggtgctcctaaagggccacagttaagagatttggaaagaggggttgatgttgtt
gttgcaacacctggaaggttgaacgacattctagaaatgcggaaaataagcctaaagcag
gtctcgtaccttgttctagacgaagctgaccgcatgctagacatggggtttgaaccacaa
atacgaaaaatagtaagagacataccttctggtcggcaaactctgatgtacactgctact
tggcccaaggaagtccgaagaattgcagatgagcttcttgttcaccctgtccaggtgacc
attggaagtgtggatgaacttgttgctaataaagctattactcagcatgtggaggttatc
actccctcagaaaagcttcggcgtctggagcaaatattgcgatcccatgattcaggttcc
aagatactaatattctgtaccaccaagagaatgtgcgaccaactatcaaggacactcaat
aggcaatttggagcagctgccattcatggtgacaagtctcaaaatgaaagagagaaggtc
ctgagtcaatttagatctggacgagctcctattttggtggctacagatgttgcggcacga
ggtttggacatcaaagatatcagggttgtgatcaactatgacttccccactggtgttgag
gactatgttcacaggattggcaggacgggaagggccggtgccactggtttggcctataca
tttttgtgtgatcaggattcaaaatatgcttccgacctaattaaaatcctggaaggggca
gaccaagatgttcctcctgaactgttggacatggtatctcggggtgggcgtggtaggaag
cgtaacaaatgggcagctcgctctgagaggggtgttggttcatgctctgaactggattca
aggtatggtggcaggttagagagtagtcgcggtggccatggaaaggatgattatggtggc
cgtagcaggcatgatcatggtgggtctcgcaggtctggtagaggtcgcagcagaagccgt
agcaggagtgacagtgatagccgcagcccaagccccaagagacggcgccatgatgtgctg
gctagccgtagcaggactagaagtcggagccgaagcaggagcaggaacaagagcagaagc
agaagcaggaacaggagcaggaacaagagcagaagcaggagcaggagttacaccaggaat
cgccgtgctagccgtagcaggagtcgtagccctggcgctagacgcagggctgaaagaaga
gctggctctgggtctacacgtcctgactctgtcctcccagtggagaaaaaaagctcaccc
agtgttgacccttcaaatgaccacaggaggggtagtgttgacccttcaaatgactatcag
gtggaggatgggaagataggaaaggttgatctggatcggtcgcccagtccgcaggagcag
gatgacaagtctgctccatatagtcctgtgtataatggcgaaggaggcagggggtcaatg
agccctaatgttgagccagtggtggatgctaaacccgtggaagtctctgtgagcagcacg
aagagggaggatcaagaggaaggtatgatagatgaagagggagaggagggtatgatagcc
gatgatgatcctcgcccaagtgcagctgtgcagaacggtgatgataagtga
DBGET
integrated database retrieval system
