Hordeum vulgare subsp. vulgare (domesticated barley): 123443688
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Entry
123443688 CDS
T11213
Name
(RefSeq) uncharacterized protein LOC123443688 isoform X1
KO
K24155
rabconnectin-3a
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
123443688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123443688
Membrane trafficking [BR:
hvg04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
123443688
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
123443688
RAVE complex
123443688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_WDR3_1st
Beta-prop_EML
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
WDR55
Beta-prop_WDR5
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_VPS8
WD40_Gbeta
Beta-prop_IP5PC_F
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
123443688
NCBI-ProteinID:
XP_044976124
UniProt:
A0A8I6XU41
LinkDB
All DBs
Position
3H:complement(298847853..298896184)
Genome browser
AA seq
2451 aa
AA seq
DB search
MGEQDPLPQLPLALHPPHLIPPAPTTDHRALSFLPDFGGLPWVAYAAGSLLVVSHLPSPP
GTSGSETVEDESPFFCQVIDLHTPVSAVAWCGRGRGELAAASGNSVSVFQPAPSSGSFSW
LLRWAITETFTVSSIAWTGSGDGIVVVGGGVAMWARAHSSWQLAWRSTPQVPQSLVSATH
FVHAPVVAASAAAPVEGNVPVLVFLNDAKLGLETAELLHPQPVSMIQWRPLPLCVGDLSE
VRREILMTCCLDGTARLWAGTEVTRSKKKPTSRRSFSVIAVIELENILNGVLGVDISVRW
AVETGSIVSQDEEAKFKLFSGHSWQNQVGKCEWLVSVGPGRCTNFWAAHCLDDVSPPRCP
RITLWKQNEPQAWEESAINPKSTVQPIFVEVVISRSICSGPPTRCSLLHLLPDNSFSWSR
LAFGLSSDSGSHVSSDSSKSISCCSTKTINQVGHKGSIIEVSVHPYSCEIELAVSMDSSR
MLFVWSLSTLSTLISTLHAPTHPLWKLLCKFDLRDISADAQYSCLCWVPSVFHDNRFLVL
GGEKGADFVVARIPNGGVVSCHKMFTLPFLGGSNAEEPPDSIHTIPLACNCNKSFLNNSF
LVVCVWRKSFQVLSWKVVLHSENHHEGRGCSCEFSANSLSTADQGRHVTYVHREMFAAAI
YECSTVFPTDADGEYPTCISVKSLDNTVLPLQQNVPSATSPGYHIATGHSDGTVKLWKMS
GADNPLQTRRGSNSWELVGMFGAHPGPITAISLSRCGRVATVGRNVQKNSTSIHIWEAVK
LMGDGCFLLEDALMIQSAVVGLDWLSLGNGRFLLAVCFRNKLHIYSHKHPSFQNVLHTAN
LEEKHLWSCIALAHSHHDVASFCWGPKASIVLVHNNHLSLFSSWLVRGANECITQKGVCS
ATDVHDKLPCTVHVNETSFGKSGLSENYSNTEAIENNSTLLPGQHNSHCSNGLWSLLDIS
SNLSGPLAPYHPRALIQHLYSGEWKRADGILQHLAESMKASTTLNTLLDCGSCSKSCHNI
PELPLSQYFTDTPSSDISSKGLLWGDNGNSAAFNLLSPSNSFSYMTNNLGINTTTSTSQR
SEISQLLDKNFGMFAISDTEKIQIHAVSDLLGEITDQNRASPYKTLDEAGRRFWIAVQFQ
RLYMLRGFGDLSSAEGCHVDSASIAWAFQSDCQDDLLDYVLPAESTWLEMQNLGMGLWYT
NMSQLRTRMEKLARLQYLKSKDPKDCALLYIALNRIKVLVGLFKVSRNEKDKRLYEFLCR
NFQEEKNKAAALKNAYVLLGRHQWELAIAFFLLGGDTSSAINVCAKNLQDEQLAMVICRL
VEGSGGPLERNLISNVLLPDAVEKGDHWLSSLLEWMLGNYSQSVSKLFGCHPKLLFDESD
TQGGQNVFADPELGQYCAILSTKNSFRNCAGEALSAKLSKLSSALAACALNRCGLPLEAL
ECLSCKSSIVEKDGTSSQHGADDKILDGILNPFNASSNWLSSSVVNDVESELKVTMASNY
LSRMLRNHFLCANCGLPLAKDKVLKEHNSHGIEELTRDVSAAISIFDKRFSLQFYDIAEK
ILASCCHDGLLFLAYVLLSVCRSPDGGTNSHCLEGCASRSIDYLLLVSCKESFKFLTRYV
VSCCFISSVLNTDLTNITACTPMENMKYIIATLSHFLSTSRLLLKHDLSRTSALDKTSAI
STVIDLLEYNIGFSVSWLCHDIKALLIMSNPVVGASANDESFQVLLDRLMQAAHHRSHGI
SMNTEVVMLNGSLDKRQPGGSEDSSLSIDEKWHLIGSSLWIGLSSFMKHHLKEFIGKEKL
ELEACTSDVKEFKGFVPSVAAKFVIDSLQFVSSSLVRLHASFLREKLSNNLHPSVLFWLE
YMLSQPRSNKTSHDQLAYTVQGTNTENMEVLFHVLWEISANPMDVCAAFVNEDVNCFPLN
NTKLGRSWKNMVESTKVERENDSTQSNGGENKCSVSSQDNEKGRAFVDKASSDVETSLEP
KRKCLIEQKSFQSPKELLRRNGELLEAICLNSTNEQHAAIATNRKGLVFFNWHGNQQDKK
SAEYIWSGSEWPSDGWACFESTPAATPISPSVGPGRRRGSHLGSDGANIGVGSLAKPGRD
LTGGGAFGIPGYAGIGASGFGWGEPDEFEDFVDPPTTLENIHSRALSRHPSLPLLLVGSS
NTHVYLWEFGKDSARATYGVLPAANIPPPYALASISAVQFDYYGQRFATAAFDGTICTWQ
VEVGGRSNVHPTESSLCFNSHASDVAYVDASGSVLTAAGCNSNGANVVILDMLAPPATCQ
TSIVCHEGGARSLSVFDNNIGCGSISPLIVTGGKSGDVALHDFRFVSTGKSKHYKTSAGG
SSRGMIWHIPKAHLGSVTSLSTIRDTTLFLTGGKDGDVKLWDARNFQLVFHWPKLHERHT
FFQPTSRGFGGVVRAAVTDINVLSNGFVSCGGDGSVKLVQIKNEFATVHQD
NT seq
7356 nt
NT seq
+upstream
nt +downstream
nt
atgggggagcaagacccgctgccgcaactcccgctcgccctccatccaccgcatctgatc
cctccggcgcccaccaccgatcaccgcgccctctctttcctccctgatttcggcggcctc
ccctgggtcgcctacgccgcgggctccctcctcgtcgtctcccacctcccctcccctccc
ggtaccagcggaagcgagaccgttgaagacgaatccccattcttctgccaagtcatcgac
ctccacacccccgtgtccgccgtcgcttggtgcggccgcgggagaggcgagctcgccgcc
gcgtccggcaactccgtctccgttttccagcccgcaccttcctcaggttcattcagttgg
ctcctgagatgggccatcaccgagacgttcacggtcagctccatcgcctggacgggttct
ggcgacggcatcgtggtcgtcggtggtggcgttgccatgtgggccagggcgcactcctcc
tggcagctcgcttggaggtccacaccacaagtgccgcagtccctcgtctctgctacccac
ttcgtccacgcccctgtcgtggcggcgtcagctgctgctcctgtggagggcaatgtgcct
gtcctggtatttctgaatgatgcaaaattgggtctggagactgctgagctcctgcatcct
cagcccgtttccatgatccagtggaggcctttgccgttatgtgtgggtgatctgtctgaa
gtaaggagagagatcctcatgacctgctgcttggatggaactgcccggctatgggctggg
actgaggtgaccaggtcgaagaagaagcctacttcgcgaagatctttcagcgtcattgca
gtgatcgagttggagaacattctaaatggagtgcttggagttgacatatctgtgagatgg
gcagtagaaacaggcagcatcgtatcacaagatgaagaagctaagttcaagttgttttca
ggtcattcctggcagaaccaggttggcaaatgtgagtggctggttagtgttggccctggg
cgttgtaccaatttttgggctgctcattgtcttgatgatgtatctccaccaaggtgccca
cggattacactatggaagcagaacgaaccacaggcttgggaagaatctgctattaaccca
aaatctactgtacaaccaatttttgttgaggttgtaatatcacgaagtatatgttctggc
ccacccacaagatgctctttgcttcatttgctgcctgataattcattcagttggtctcgc
ctggcttttggtctatcatcagattctgggagtcatgtttcaagtgattcttctaagagc
atctcatgctgttcaaccaagactattaatcaagttggacataagggtagtatcatagag
gtgtctgtccatccatatagctgcgaaatagagctagctgtttctatggattctagcaga
atgctatttgtctggtctctttcaaccttatcaactctcatatcgaccttgcatgcaccc
acccatcctttatggaagctactgtgcaaatttgatctgcgtgacatttctgcagatgcg
caatattcatgtctttgttgggttccttcagttttccatgataacaggtttcttgtcctg
ggaggggaaaaaggagcagattttgttgttgccagaattcctaatggaggtgttgtttca
tgtcacaagatgttcacacttcctttccttggagggagcaatgcagaagaaccacctgat
agcattcataccatacctttagcttgtaactgtaacaagtcatttttaaacaacagtttc
ctagttgtgtgcgtatggaggaagagctttcaagttttatcatggaaagtagtcctgcat
tcagaaaatcatcatgaaggaagggggtgttcatgtgaattttctgccaactcactttcc
actgcagatcaagggagacatgttacttacgtccatcgtgaaatgtttgcagctgctatt
tatgaatgttctacggttttccctactgacgcggatggagaatatcccacttgcatttcg
gttaagtctctggacaatactgtattacctctacaacagaatgtaccttctgcaacttcc
ccaggttatcatattgctactgggcactctgatggcactgtgaaactttggaagatgtct
ggtgcagataaccctttgcagactaggagagggagcaacagctgggagctagttggcatg
tttggtgctcatccaggaccaattactgcaatttcactatccagatgtggtagagttgct
actgttggcagaaatgttcagaagaatagtacatccattcatatctgggaagcagtaaaa
ctcatgggagatgggtgctttctcctggaggatgctctaatgattcaaagcgctgttgtt
ggtttagattggctatctttaggcaatggtagatttttacttgcggtctgttttcgtaat
aagttgcatatatattcccataagcatccttcctttcagaatgtgctgcacactgcaaat
ttggaagagaagcatctttggagttgtattgcattagctcattctcatcatgatgttgcc
agcttctgctgggggccaaaggcgtcaatagtgcttgttcataacaatcatctttcactc
ttcagttcatggttagtaagaggagcaaatgaatgtattacccagaaaggcgtttgttct
gccacagatgtgcatgataagttgccatgtactgtgcatgttaatgaaactagctttggt
aaatctgggttatctgaaaattacagcaacacggaggccattgagaacaatagcacgctg
ttaccaggccaacacaatagtcactgttctaatggtttgtggagcttgttggatatatct
agtaatctgagtggacctttggcgccatatcacccgagagcacttatccagcatctttat
tcaggtgaatggaaacgtgcagatgggatcctgcagcatcttgctgaatcgatgaaagca
agtacaacattaaacaccttgttggactgcggttcatgcagtaaatcatgccataatatc
cctgaacttcctttgtcgcagtactttacggatacaccctcaagcgatatttctagcaaa
gggttactgtggggtgacaatggaaatagcgcagccttcaacttgctgtcaccatcaaat
tcattttcttacatgacgaataatttaggtatcaataccaccactagtacatctcaaagg
tcagagataagtcagctccttgataagaactttggcatgtttgcaataagtgacactgaa
aaaatacagatacatgcagtttctgatcttttaggcgaaattactgatcagaaccgtgct
tctccctataaaacccttgatgaagcagggcgaaggttctggattgctgtgcagttccaa
cgcctatatatgcttaggggatttggagatttatctagtgctgaaggatgccatgttgat
tctgcttccattgcatgggccttccaatctgattgtcaggatgatctacttgattatgtt
cttcctgcagaatcgacttggttagagatgcaaaaccttggtatgggattatggtatacc
aatatgtcccagctaaggaccaggatggagaagctggcaaggttgcagtatcttaaaagc
aaggaccccaaggattgtgctctgctctatatagcattaaatagaataaaagtattagtt
ggccttttcaaggtcagcagaaatgagaaggataaacgtctgtatgagtttctctgcagg
aacttccaggaagaaaaaaacaaagccgctgctcttaaaaatgcttacgtactactggga
aggcatcaatgggagcttgctatagcatttttcctgcttggaggtgatacttcctctgcc
atcaatgtttgcgcgaagaaccttcaagatgaacagcttgctatggtaatttgtcggctt
gttgagggatctggaggacccttggagcgtaacctcatttcaaatgtgctgctccctgat
gcagttgagaaaggagaccactggctttcaagcctacttgaatggatgctagggaattac
tcccagtctgtcagtaaattatttggctgccatcccaagttactgtttgatgaatccgac
actcagggtggtcagaatgtgtttgcagacccagaattgggtcaatattgtgcaatccta
tcaacgaaaaatagtttcagaaactgtgctggtgaagctctatctgccaaattatctaag
ctttcatctgcactggctgcatgtgccttaaacagatgtggactacctcttgaagcactt
gaatgcctatcttgtaaatcgagcatagttgagaaggacggcaccagctcacaacatggt
gcagatgacaagattcttgatggaatactaaaccctttcaatgcttcttccaattggctt
tcatcatctgtcgttaatgacgttgaatcagaactcaaagtaaccatggcttcaaattat
ttgtcacgcatgctaagaaatcactttctctgtgcaaattgtggcctaccattagctaaa
gataaggtccttaaagagcacaacagccatggcattgaggaacttacacgtgatgttagt
gctgcaatatcaatatttgataaaaggttctcacttcaattttatgatatagctgagaag
atccttgcctcctgttgccatgatggtttattatttcttgcatatgttctactatcagtt
tgtagatcaccagatggtggaactaatagtcattgtcttgaaggttgtgcttcccgttca
attgactatctgttgttggtgtcatgcaaggagagttttaaatttcttactcgatatgtt
gtctcctgctgcttcatctcttctgttcttaatacagacctcaccaatattactgcatgc
acacctatggagaacatgaaatacattatagcaactttatcacattttctgagtactagc
aggctactcctcaaacatgacctcagtagaacttctgcattggacaagacatccgccata
tctactgttattgatctccttgaatacaacataggcttttctgtttcctggctatgccat
gacataaaggcattacttatcatgagcaatccagtggtaggtgcttctgcgaatgatgag
tcatttcaagtattattagaccgattgatgcaagctgcgcaccatagaagtcatggtata
tcaatgaacacagaggtggtcatgctcaatggttcattggacaagagacaaccaggagga
agtgaagattcaagtctttcaattgatgaaaagtggcatttgataggttcttccttgtgg
attggattgtcatcctttatgaaacatcatttaaaagagttcattggaaaagagaaactt
gaacttgaagcttgtacaagtgacgtgaaggaatttaagggtttcgtcccttcagttgct
gcaaagtttgttattgattccctgcaatttgtgtcatcttcattagtaagacttcatgca
tcatttttaagagagaaattatcaaataatttacatccaagtgtacttttctggttagaa
tatatgttgtctcagccaaggtccaacaagactagccatgatcagctcgcatatacagtt
cagggcacaaacactgagaacatggaggtgttgtttcatgttttgtgggaaatatccgct
aaccccatggatgtctgtgcagcatttgtgaatgaagacgtgaattgctttccattaaac
aacacaaagctcggtagatcttggaagaatatggttgaaagtacaaaagtcgagcgtgaa
aacgattctactcaaagtaatggaggagaaaataaatgcagtgttagctcccaggacaat
gagaaagggcgtgcatttgttgacaaggcttcttctgatgtggaaacctctcttgaacct
aaaagaaaatgcctgatcgaacaaaaaagctttcaaagcccaaaggaacttctaaggaga
aatggggaacttcttgaggcaatatgtctcaattcaaccaatgagcaacatgctgctatt
gctaccaaccgaaagggtcttgtttttttcaactggcatggcaatcaacaggacaagaaa
tcagcagagtatatttggtcaggatctgagtggccatcagatggttgggcttgttttgaa
tctacacctgctgcaactcctatttcacctagtgttggtcctggcagaagaagaggatct
catcttggttcagatggggcaaatattggtgtaggttctttggcgaaacctggaagagac
ttaactgggggtggagcatttggaattccaggttatgctggtattggggcatcagggttt
gggtggggtgaaccagacgaatttgaggattttgttgatcctccaacaacccttgagaat
atccattcaagagcactatcacgccatccctctttgccattgttgctagtggggtcaagc
aatacacatgtgtatttatgggagtttggtaaagatagtgcaagagctacatatggtgtt
ctccctgctgctaatattccaccaccttatgcacttgcttccatatcggctgttcaattt
gattattacgggcagcggtttgcaactgctgcattcgatggtacaatttgtacatggcaa
gttgaggtgggtggaagaagcaatgtccatcctacagagtcatccttgtgctttaacagc
catgcttcggatgttgcatatgtggatgcaagtggatctgttcttactgcagctggatgc
aattcaaatggcgcaaatgttgttatcttggatatgctagctccaccagctacttgtcaa
acttctattgtgtgtcatgaaggaggagcccgttctctttctgtgttcgacaacaacata
ggctgtggatccatctcaccgctgattgtaactggtgggaaaagtggagatgtggcattg
catgatttccggttcgtttctactggaaagagtaagcattacaaaacttctgccgggggt
agctcccgtggaatgatttggcatataccaaaggctcatttagggagtgtcaccagtcta
tcgaccattcgagataccactttattcttgaccggaggcaaagatggagatgtaaagctt
tgggatgctagaaatttccagctagtctttcattggccgaagttgcatgagcggcacaca
ttttttcaaccaacctccaggggctttggtggtgttgttagggctgctgtaacggatatc
aatgtcttgtctaatggtttcgtttcgtgtggtggcgatggttctgtgaagcttgtgcag
ataaagaatgagtttgccacagtacatcaggactag
DBGET
integrated database retrieval system
