Hordeum vulgare subsp. vulgare (domesticated barley): 123444181
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Entry
123444181 CDS
T11213
Name
(RefSeq) uncharacterized protein LOC123444181
KO
K06100
symplekin
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123444181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvg03021
]
123444181
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123444181
Transcription machinery [BR:
hvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123444181
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123444181
U7-dependent histone pre-mRNA processing factors
123444181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
123444181
NCBI-ProteinID:
XP_044976751
UniProt:
A0A8I6Y073
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All DBs
Position
3H:complement(446483048..446504708)
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AA seq
1293 aa
AA seq
DB search
MEFEADGARWPEPRGGAAEAPPPPQERGEAPSPRFDSSRALRLLRELDRNVTEDLVVLMP
NLLSFLKHDDPAVVKQSIASGTNLFAAVLEEMALQVNECGRVDAWLEEMWAWMNQFKDAV
CVMMREPVPVASKLLAVKFIETWILCLTPQPNSDRMQPIEGKNRRFDASRLAKFHPSLDP
VVLEADANRAFIILVDIVQSAFAHRGSFLVGTINSLAAIGKSRPVYYDRALSVLFGFDPN
LETSKGAHSASLKYSLKTAFLGFLRSPCQAMLESKDVLVKRLRALSPGEATEQVIRQAEK
MSRNIERACRTNKDEHPTWEMSYGDVNRKNPAGRSSDTLAMAEGIAKRARFESSAASNQL
VQGIPDYSDMQIENDANMGHSSDPSLLSTDVSPVEKMIEMIGALLAEGERGAESLGILIS
SVESDVMADIVIETMKHLPEAPFPLARNKSVPQPNLQPPSNPLPENLPGNLHSLPFTAQS
VPSADGTGISPPEVLVMPGVSDSKRDPRRDPRRLDPRRTVAPAATSLIQMTVEMTSVHQT
NSLSNTPSPLPGKIEKCADYSGDPPKIEVEEHPSSKPHQAMDKGRSELLDDATELGTNFE
VHPPVEAEFPSSDVNEEMNNPLTPEAISNNGYDSMDFDVDPFSPVSKTSTPEDTNHELPL
LPSHLELIDSEKISLHILAVRRIIDDYKKNSLNTRFSLLAHLVAQSTADDNIMVLIQNHI
IFHYHDQKGHELAMHVLYQLYCANVADAPESSISTSEHYEKFFISLARSLIDSLPASDKS
FSKLLCDAPCLPESLFRFLEGLCMSQGNNQQTKDNEGDRVTQGLGTVWSLILVRPPLRQA
CLDIVLKCAIHSQDEVRGKAVRLVAKKLYDLTYASEKVEQFATDSLLAIANKHGVETDVN
LTTSKESTSEVEVSSQEASVSGSQISDAGPSESGSTMTSLVSPKQSVISVSEAKRHTSLF
FALCTKRPTLLQQLFNVYGGSPKVVKQCIHWHMPTLVRNLGSSCPEMLDIIHNPPDGSEE
LVTMILQTLTEESNPSANLVVAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLP
PDRFQDALARILQGSAHTGPALTPAEVLIAIHDINPEKDKVPLKKVIDACTACFEQRTVF
TQQVLEKALNKLVDDVPIPLLFMRTVIQALDAFPALVDFVMGLLSRLVNKQIWKMPKLWV
GFLKLAYQTQPRSFDVLLQLPPPQLEVALNKYPNLRPHLSSFVNRQNYHNKLPRHTLNIL
GFVNEPQQAPMPFAPAALQTADTTSSLPGANIM
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgaggcggacggcgcccggtggcctgagccgcgaggcggcgccgccgaggcg
ccgccaccgccgcaggagcgcggcgaggccccttctccccgcttcgattcgtcgcgtgcc
ctaagattgctgagagagctggacagaaatgtaacagaggatttggttgtgctgatgcca
aacttactgtcatttttgaaacatgacgatcctgcagttgttaagcaatctatagctagt
gggacaaatttatttgctgctgtattggaagagatggcacttcaggtcaacgagtgtgga
agagttgatgcttggcttgaagagatgtgggcttggatgaaccagttcaaggatgcagta
tgtgttatgatgcgtgagcctgttcctgttgcatctaaactactcgctgtaaagttcatt
gaaacatggatcttgtgcctcacacctcaacccaacagtgaccggatgcagcctattgaa
ggaaagaatcgaaggtttgatgcttcccgattagctaaatttcaccctagccttgatccc
gttgttctggaagctgatgcaaacagggctttcatcatccttgtggatattgtgcaatca
gcttttgctcatcgaggatccttcctagttggcaccattaattctcttgcagctattgga
aagagtaggccggtttactatgaccgtgccctttcagtgttgtttgggtttgaccctaat
ttggagacctcaaaaggagcccattcagcaagcctgaaatattccctgaaaacagctttt
ttagggtttctacggagtccttgccaggcaatgcttgagtccaaggacgttctagtaaag
cgccttcgagctctgagcccaggtgaagcaacagaacaagttattaggcaggcagagaag
atgtctagaaatatagagcgcgcttgtcgtactaacaaggacgagcatccgacgtgggag
atgtcatatggcgatgtgaatcgaaagaatcctgctggcagatcaagtgacactctagct
atggccgagggcatagctaaaagagcaagatttgagagctctgcagcttcgaatcagcta
gttcagggaatacctgattattctgacatgcagattgaaaatgacgccaatatgggtcat
tcctctgacccatctctcttgagcactgatgtatctcctgttgagaagatgattgaaatg
ataggtgctttacttgctgaaggggaaagaggagctgaatcccttggtattctcatctca
tcagtagagtcagatgtcatggcagacattgtaattgaaacaatgaagcatctacctgaa
gcaccatttccattagctagaaataagagtgtccctcaaccaaatttgcaacccccctcc
aatcccttaccagagaacttaccaggcaatctgcactctttgccctttacggcacaatca
gtaccatcggcagatggaacaggcatttcaccacctgaggtccttgtcatgcctggtgtt
tctgattcaaagcgtgacccaagaagagatcctcgtcgccttgatccacggcgaacagtt
gcacctgctgctactagtctcatacagatgacggtggaaatgaccagtgtgcaccagaca
aattctttgtcaaatacaccttctcctcttcccgggaagattgaaaaatgtgcagattat
tcaggagacccaccaaaaattgaagttgaggaacatccatcttcaaagcctcatcaggca
atggacaaagggagatccgagttgttggatgatgccacggaactagggacaaattttgaa
gtgcacccaccggtggaagccgaatttccttcttctgatgtcaatgaagagatgaacaat
cccttgacaccagaagctatttcaaacaatggatatgatagtatggatttcgatgtcgat
cctttttcaccagtctccaagacatctacaccagaggatactaatcatgagttgcctctt
cttccatctcatttggaattaattgacagtgagaaaatctcattgcacatattagctgtt
aggcggataattgatgattacaagaaaaatagcctcaatacaagattttccttgcttgct
catttggttgctcagagtactgctgatgataatattatggttttgattcagaatcacatt
atcttccattatcatgaccagaaggggcacgaactggctatgcatgtgctgtatcagctg
tactgtgccaatgttgctgatgcaccagaaagttctatatctacttccgaacattacgag
aaattctttatatcacttgcaaggtcgttgattgactcgctacctgcttcagataaatct
ttcagtaaacttctatgtgatgccccatgtttgcctgagtctctgtttagattccttgag
ggtctttgcatgtcacaaggcaacaaccaacaaacaaaggacaatgagggtgaccgtgtc
actcaaggcctgggaacagtatggagtcttattttagtgcggcctccactgcggcaagct
tgcttggatattgttctgaagtgtgctattcactctcaagatgaagtcagaggaaaggcg
gttagattggttgcgaaaaaactctatgatctaacatatgcatcagaaaaagttgagcag
tttgccacggacagtcttctggcaattgctaataagcatggtgtggagacagatgttaac
ctcacaacctcaaaagaatctacatcagaggttgaagtaagcagccaggaagcttcagtt
agtggttcccagatttcggatgctggaccttctgaaagtggatctactatgacctctctg
gtttcacctaaacaatcagtaatatcggtatccgaggccaaacgccacacttcattattt
tttgcactttgcacaaagagacccactctacttcaacagctgttcaatgtttatggaggg
tctccaaaagttgttaagcagtgtatccattggcatatgcccactcttgtaagaaatctg
ggatcatcatgtcctgagatgctggacattattcataatccacccgatggcagtgaagaa
cttgttactatgatactgcaaacactgaccgaagaatcaaatccttcagccaacctggtc
gtggctgttaaacatctgtatgagaccaagctgaaggatgcatctattctcattccattg
ctatcctcatttccgaaggaagaggtgctgcccatatttccgagactagttgatctccca
cctgacaggttccaagatgcacttgctcggatattgcagggatctgctcatactggtcca
gcgttaacccctgctgaagttctgattgcaattcatgatattaatccagaaaaggacaaa
gttcctctaaagaaggtcatagatgcttgtactgcttgctttgagcagcgtacagtattt
actcagcaagttctagagaaggcactgaataaactggtcgacgatgtaccaattcctctt
ctttttatgagaacagttattcaagcacttgatgctttcccagctttggttgattttgtc
atgggattactttccaggcttgtcaataagcagatctggaaaatgccaaagctgtgggtt
gggttcttgaaattggcataccagactcagccacgctcttttgatgttttattacagtta
cctccaccgcagcttgaagttgcattgaataagtatccgaatcttcgaccacatctttct
tcctttgttaatcggcagaactatcacaacaagttgcccagacatactttgaatattttg
ggctttgttaacgaaccacagcaggcaccaatgccatttgcacctgctgcattacaaaca
gcagacacgacttcctctcttcctggtgcaaacataatgtga
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