Hordeum vulgare subsp. vulgare (domesticated barley): 123444247
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Entry
123444247 CDS
T11213
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03082
ATP-dependent chromatin remodeling
hvg03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123444247
03083 Polycomb repressive complex
123444247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123444247
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
123444247
Histone modification proteins
HAT complexes
HATB complex
123444247
HDAC complexes
Sin3A-HDAC complex
123444247
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
123444247
PRC2.2
123444247
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
123444247
Heterochromatin formation proteins
Other heterochromatin formation proteins
123444247
Chromatin remodeling factors
NuRD complex
123444247
NuRF complex
123444247
NuRF complex (fruit fly)
123444247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
WDR55
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
eIF2A
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
123444247
NCBI-ProteinID:
XP_044976847
LinkDB
All DBs
Position
3H:458249523..458257574
Genome browser
AA seq
519 aa
AA seq
DB search
MAQPICTPHLLPFSLQPQPRYSSAPWYFAPSGRQTGTDSQRALPLHRARARAEQSSAAAS
SGAEMKERGGSRAAVDERYAQWKSLIPVLYDWFANHNLVWPSLSCRWGPQFEQATYKNRQ
RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNR
IRELPQNSRIIATHTDSPDVLIWDVEAQPNRHAVLGATDSRPDLILRGHQENAEFALAMC
PAEPYVLSGGKDKSVVWWSIQDHISGLGDSSKSETPPGASGSKHSKTATEKDSPKVDPRG
VFHGHDSTVEDVQFCPSSAQEFCSVGDDACLILWDARTGTSPAVKVEKAHGGDVHCVDWN
PHDVNYILTGSADNSVRMWDRRNLGPGGAGSSIHKFEGHKAAVLCVQWSPDKASVFGSSA
EDGFLNVWDHEKVGKKKNPNSPGGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTG
GGGTLQIWRMSDLIYRPEDEVLSELETFKSHLASCTPRA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcccatttgcacaccgcatctgttaccgttttcactccagccgcagcctaga
tactcctctgcgccttggtacttcgcaccgagcgggaggcagacaggaacagactcccag
agagcactccccctgcacagagcgagagcgagggcggagcagtcgtcggcggcggccagc
agcggagcggagatgaaggagagaggcgggtcgagggcggcggtggacgagcggtacgcg
caatggaagtcgctcatccccgtcctctacgactggttcgcgaaccacaacctcgtctgg
ccgtccctctcctgccggtggggtcctcagtttgagcaggctacctataagaatcgccag
cgcctctacctatcagagcagacagatgggagtgtccccaataccctggtcattgcaaac
tgtgaagttgtcaagccacgggttgcagctgcagaacacatatcacagttcaatgaggaa
gcacggtcaccttttgtaaagaaatacaagactatcattcaccccggagaggttaaccga
atcagggagcttccacagaacagtaggatcatcgcgactcatacggacagtccagatgtg
cttatttgggatgttgaggcccagccaaataggcatgctgtcctaggagctactgattct
cgccctgatttgattttaagaggacatcaggaaaatgctgagtttgcccttgccatgtgt
ccagcagaaccatatgtgctctcaggaggaaaggacaagtctgtggtctggtggagcatc
caggatcacatatctggacttggagattcctcaaaaagcgagactcccccaggggcatca
ggcagcaagcatagcaaaactgcaactgaaaaggatagtcctaaagttgacccccgaggt
gtattccacgggcatgatagcactgttgaagatgtgcagttctgcccttcgagtgcacag
gagttctgcagcgtgggtgatgatgcttgtcttattctttgggatgcccggactggtact
agcccagctgttaaggttgagaaagctcatggtggagatgttcattgcgtcgattggaat
ccccatgatgttaactacatcttaactggttctgctgataactctgtccgtatgtgggat
cggcgaaatctgggtcccggaggtgctggttcttcaattcacaaatttgagggccataaa
gctgccgtcctttgtgttcagtggtctcctgacaaagcatctgttttcggaagctctgca
gaagatggtttcttaaatgtgtgggaccatgagaaggttggaaagaagaaaaatcccaat
tcgcctggtgggcttttctttcaacatgcaggtcatagggataagattgtagatttccac
tggaactcatcagacccttggaccattgtgagtgtatctgatgatggtgagagcaccggt
ggaggtggaactttgcagatatggcgtatgagtgatttgatctaccgcccagaggacgag
gttctttcagagctggagaccttcaagtctcacttggccagctgcactccgagggcttga
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integrated database retrieval system
