Hordeum vulgare subsp. vulgare (domesticated barley): 123444512
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Entry
123444512 CDS
T11213
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123444512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123444512
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123444512
mRNA degradation factors
5'-3' decay
Decapping complex
123444512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
123444512
NCBI-ProteinID:
XP_044977180
UniProt:
M0Y406
LinkDB
All DBs
Position
3H:501696697..501702920
Genome browser
AA seq
813 aa
AA seq
DB search
MPGAEADAGGGGGGGGGASSSSAADSFDAGQYAFFGKEPRDGLELGCLEVDGGHGNGGGF
SGAENGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGARNPGVIGDRRSISRGSS
LTVDWTEDVEFPNYQDILENEELQEGKRWWSSQSHSLVQQGDNKPLSRTSSYPQQPLQHR
SSEPITGPKSPPFTSFPPPGGRSPHPAQGLTRHGSIPSFGAGIQMGSPSMPLPGSPYHMV
GLPHGLPYGGSMPFGGPNMHVSNPMQNDWSNQANLFTGEHLNLLPNLLQKQISLPNSPMS
SLLFSQQQQRLAQLQPPHQNYLNLPPHLFYHHHPPEIPGRFESATSLPSSRDKRSRSGRG
KHSLRFSQPPSDTTGSQNGEGGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQ
ACMAKKGSTSRQKISFSPTSIKDLPSKSRSNGDQHAYLQVDALGRVSFSSIRRPRSLLEV
DHPSSGEGPHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVDDIDRLLQSSQAQDNSFQL
RRRRQVLLEGLAASLQLVDPLGPSKSTNSSGLSGLAPKDDIVFLRIVSLPKGRKLLARYL
RLIAAGSELTRIVCMAIFRHLRFLFGGLPPDSSAAETTVALAKTVSTCVHHMELGALSAC
LAAVVCSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQHAVSSYTSSNRALWQASF
DAFFGLLTKYCLSKYESILQMFRMQASGSVIGSEASQATSREMPVELLRASLPHTNEQQR
QMLLDFAQRTTPASSFNPPGASGGHITSESVPG
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgccgggagccgaggccgacgccggcggcggcggcggcggcggcggcggcgcttcctcc
tcctccgctgcagatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgt
gacgggctcgagctaggttgcttggaggtcgacggcggccatggcaatggcggcggattc
agcggggcagaaaatgggctgtaccgtctctcttcggttggagaagagattgacaatcta
agtaacttgtcggacgtcgatgatcttgcaagcacttttgctaagttgaaccgaaccgtt
agtggagcacggaatcctggtgttattggtgacagacgatccatttcaagaggaagttct
ttaactgttgattggactgaggatgtagagtttcccaattatcaggatatattagaaaat
gaggaactccaggaaggtaaaagatggtggtcgtcgcagtctcattctttggtgcagcaa
ggggacaacaaaccgttaagtagaacatcttcctatcctcagcagccactgcagcaccgg
tccagtgaacctatcacaggaccaaagtctcctccgtttacctcgtttccgccaccaggc
ggtaggtcaccacatcctgcccaaggtcttacacgtcatgggagcattccatcgtttgga
gctgggatacagatgggttctccaagcatgccactgccaggttccccatatcatatggtc
ggattacctcatggactaccatatgggggaagcatgccctttggtggtcctaatatgcat
gtaagcaatccaatgcaaaatgactggtcaaaccaagccaacctgttcactggggagcac
cttaatctactgccaaatttgttacagaaacaaatatcgcttccgaatagcccaatgtca
tcactgctattctctcagcaacagcagagattggcacagctccaacccccccatcagaat
tacctaaatttaccaccccacctattctaccatcatcaccccccagagataccaggcagg
tttgaatctgctaccagtcttccttcgtcgagagacaagagatcaagatcaggaagggga
aaacacagtttacgtttttctcaaccaccatctgatactactggtagtcagaatggtgag
ggtggcggactaaagtttagatccaagtatatgtcatctgaagagattgagtctattcta
agaatgcagcactcggcaagtcacagcagtgatccttacgttgttgattattatcatcaa
gcttgcatggcgaagaagggttccacttctaggcaaaagatcagtttctccccaacatca
attaaagacctgccctccaagtccaggtcaaatggtgaccagcatgcatatcttcaggtc
gatgctcttgggagagtttctttctcttccattcgcaggccccggtctcttcttgaagtt
gaccatccttcgtcaggtgagggtcctcatgatcagaagtcttccgtgaggtccttggag
aaagaaccaatgctagcagccagggtcactgttgaagatgccattggtcttcttcttgag
gtggatgatattgacaggctcctgcagtctagccaagcacaggacaacagtttccagctg
aggcgaaggcgacaagttctccttgaaggtctagctgcatcacttcagcttgttgaccct
cttgggcccagcaaatctaccaattcatctggtttatctggtttagccccaaaggatgat
attgtctttcttcgcattgtttctcttcccaaaggacgcaagcttctggctcgttatctc
cggcttattgctgctggaagcgagttgaccaggattgtatgcatggctattttccgacat
ctgaggttcttgtttgggggtttaccaccagattcgagtgcagcagagacaacagttgct
ctggcaaagactgtttcgacttgtgttcaccatatggagcttggtgctcttagtgcttgc
cttgctgcagttgtctgttcatctgaacagccacctctccgtcctctcggtagctctgct
ggtgacggggcttctcttatcattaagtcagtactggaccgagcaactgagttactgact
gatcagcatgctgtatccagctatacctcgtcaaaccgagctctctggcaggcgtcattt
gatgctttctttgggcttctgacaaagtactgcctcagtaagtatgaaagtattttgcag
atgtttcggatgcaggcatcaggctctgtgattggatctgaagcctcccaggcaactagc
agggagatgccagttgagttgctacgtgcaagccttcctcacacaaacgagcagcaacgc
cagatgctgcttgatttcgctcagagaaccacacctgccagcagttttaatccccctggt
gctagtggtggacacatcacttctgaatcggttcctggttga
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