Hordeum vulgare subsp. vulgare (domesticated barley): 123445058
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Entry
123445058 CDS
T11213
Name
(RefSeq) uncharacterized protein LOC123445058 isoform X1
KO
K06670
cohesin complex subunit SCC1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hvg03036
]
123445058
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
123445058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad21_Rec8_N
Rad21_Rec8
CNDH2_N
Motif
Other DBs
NCBI-GeneID:
123445058
NCBI-ProteinID:
XP_044977917
LinkDB
All DBs
Position
3H:559700689..559712468
Genome browser
AA seq
1609 aa
AA seq
DB search
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVTDTDIGVSVDSIIFPEVPIALRLSSHLM
VGVVRIYSRKVNYLFHDCSEALLKIKQAFRSAAVDLPPEESTAPYHSITLPETFHLDDFE
LPEAEFEGDIDHHISSKEQITLQDNPERTGYSTSEFGLDERFGDGSSSHMGFDLEEELLL
AKDHPIQLESGDGIIIQGQSSLHLTDMDVDDNPSKDEGAEGYNKMDDEPSTSSRQNQSNA
DDSRNNIPNWTGYNLRTPDLNDMLFHNEDDAGPSTSYYQPSPFPCDDPASPASPASPEFV
SAQAPATPGLMEETVPSRVHESPVLSPQRKASPSSNEETAKVDNFAAPPSYFLHSAASNA
NDAAGAEMVGFGLAKPVQVGSSVDVQDNFPAPSSDFIHSAAANANDAVSAEIAEFGLAKP
VQVESSGAVAPPSDFHHSAAVNANDAVGAEMAEFRVANPVHESSGAVQENFAAPPSDFLH
LAASHANNAVGAEMAEFRLANPVQVESSGAVQENFAAPPSNFLHPAASQANDAIGAEMTE
FRLANPVQVESSGAVQEHFAAPPSDFHRPAAAHANDAIGAEVAEFRLANPVQVESSGAVQ
EHFAAPPSDFHRPAAAHANDAIGAEVAEFRLANPVQVESSGAVQEHFAAPPSDFHRPAAA
HANDAIGAEVAEFRLANPVQVESSGAVREMDFLRQHCVTVDMPPEPQTSNLVATVDKSVV
NTDNIAVSGQTLPFKANMGTVPFVQDTSEPRANGSIETYVTGNQTHFNEGSVNVQGYNFL
ASNVSVEPYPSGSTEPWVTGQQQQSFLSQASWGRPSGPPTEPRMTGHPTHFNEGSVNVQG
YNLHASNVFLGHNLQEMPPGMTHSNISTAAFQQNTGTIPQYMSYNDRPNDMFTSNFPERE
RMLSAPYIGFHQTNDLGQLTAEKGITESDGSNKIGSLSSRKRHLEDSMPAPESRTTENLS
SRPHGQRTTDAISNDDDILASILVGRRTPGLVLDSTPLPPKASSSKRQRLTPKTALAPKS
RTPKRRVKMDDDTVIHADIIRQQLISTEDIRRIRRKAPCTRTEIWMIEKGSLEDDIFREP
IFSCMHKDLNDLHYRTYESVSQFTIHNREPQRQVDISETIPADNRNAGTSGAEESAALDH
QLHMVLPDTNNVDISGAKDIAALDHHLNMGLPDGAHNVGISGANDSAALDHQQNMGLPDG
AHNVGISGANDSVALDHQLHIGLPDGAHNVGISGANDSAALVHQLHMGLPDGAHSVGISG
ANDSAALDHQLHMGLPDGAHLDATPQEATGTVDATAAFGLQMPSDKLDNNIEKVTEFGDG
KEIPLVDETNAVTDITAHDDTLDKDCHHDVSADMQRNTNADTPLFVQDGITHDSATITDA
PDVALHSSGPACAQAVDGREGELSEIVHSDINAFEDKEMPTSEITGLELTECASGFPQPT
EHENAVSAMGENSGLQENNAGSFTDMDNTGHDFALKEISDFGSAIHGVDGTDFPHYDDDG
DFDEAIDLDDDDDEPNPDEFQSHDALSGWSSRTKGVARYLKTLFDEESGRGRKNVVIDHL
VHGKTRKEASRMFFETLVLSTKDYIQVEQVNPFDLINVKPVSKLLKTDF
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgttctactcgcagttcatcttggccaagaagggccccctcgggaccatatggatcgcc
gcgcacttggagcggaagctccgcaagaaccaggtcacggacaccgacatcggcgtctcc
gtagattcaattatattccctgaggttccgattgcgctgcgattatccagccatcttatg
gtaggcgtggtcagaatctattctcggaaggtcaactacctatttcatgattgcagtgaa
gctttgctcaagataaaacaagcatttaggtctgctgctgttgatctcccccctgaagaa
tcaactgctccatatcattctataacacttcctgagacattccaccttgatgattttgag
ttaccggaggctgaatttgagggggacattgatcatcatataagctcaaaagaacagatt
accctgcaagacaacccagagagaacaggatattcaacatctgaatttggtttagatgaa
agatttggtgatggcagttcttcacatatgggttttgatttggaggaggaattattgctg
gcgaaggatcacccaattcaactcgaatctggtgatggcatcatcattcaaggtcaatca
tcacttcatcttacggatatggatgttgatgataacccaagtaaagatgaaggggctgaa
ggatacaacaaaatggatgatgaaccttctacttccagcaggcaaaatcaatcgaatgca
gatgattcaaggaacaatattcctaattggactggttacaatttgcgcactcctgatttg
aatgacatgcttttccacaatgaagatgatgcagggccatcgacttcatactatcagcct
agtcccttcccttgtgatgatcctgcatctcctgcatctcctgcatctcctgagtttgta
agcgctcaagccccggctacacctggattaatggaagaaacagttccttccagagtgcac
gaaagtcctgttctgagtccgcaacggaaagcttcaccatcaagcaacgaggaaactgca
aaggttgacaattttgctgctccaccctcatattttctccattcagctgcatccaatgct
aacgatgctgctggtgctgagatggtgggatttggattggctaagcctgtgcaagttggg
tcttctgttgatgtacaggacaattttcctgctccatcctcagattttatccattcagct
gcagcaaatgctaatgatgctgttagtgctgaaattgctgaatttgggttggctaagcct
gtgcaagttgagtcttctggtgctgtagctccaccctcagattttcaccattcagctgca
gtaaatgctaatgatgctgttggtgctgagatggctgaatttagagtggccaatcctgtg
catgagtcttctggtgctgtacaggagaattttgctgctccaccctcagattttctccat
ctagctgcatcacatgctaataatgctgttggtgctgagatggctgaatttagattggct
aatcctgtgcaagttgagtcttctggtgctgtacaggagaattttgctgctccaccctca
aattttctccatccagctgcatcacaagctaatgacgctattggtgctgagatgactgaa
tttagattggctaatcctgtgcaagttgagtcttctggtgctgtacaggagcattttgct
gctccaccctcagattttcaccgtccagctgcagcacatgctaatgacgctattggtgct
gaggtggctgaatttagattggctaatcctgtgcaagttgagtcttctggtgctgtacag
gagcattttgctgctccaccctcggattttcaccgtccagctgcagcacatgctaatgac
gctattggtgctgaggtggctgaatttagattggctaatcctgtgcaagttgagtcttct
ggtgctgtacaggagcattttgctgctccaccctcggattttcaccgtccagctgcagca
catgctaatgacgctattggtgctgaggtggctgaatttagattggctaatcctgtgcaa
gttgagtcttctggtgctgtacgggagatggattttctgaggcaacactgtgtaactgtg
gatatgccaccagaaccacaaacatcaaacctggtggctactgttgataagtcggtggta
aatactgacaatatagctgtatcaggtcaaacactaccttttaaagcaaacatgggaact
gtgccatttgttcaggatacttcagagccacgcgctaatggttctatcgagacatatgtg
acagggaatcaaacacattttaatgaggggtcagtaaacgtgcaagggtataattttctt
gcttctaatgtatctgtagagccataccctagtggttctactgagccatgggtgacaggg
caacaacaacaaagctttttgtcccaagcaagttggggtaggcctagtggtcctcctacc
gagccacgcatgacagggcatccaacacattttaatgagggatcagtaaatgtgcaaggg
tataatctgcatgcttctaatgtgtttctcggacacaacttacaagaaatgccaccagga
atgacacacagtaatatatcaactgcagctttccagcagaacaccggaacaataccgcaa
tacatgtcatataatgatagaccaaatgacatgtttacctcgaatttcccagaacgcgag
agaatgctgtcagctccatatattggattccaccagacaaatgacttgggacagttaact
gcagagaaaggaatcactgagtctgatggaagtaacaaaataggtagccttagtagcagg
aaacgtcacttggaggatagcatgccagctccagagagtaggactactgaaaatttgtcc
agcagaccacatggtcaaagaaccactgatgctatttctaacgatgacgatatactggca
tctattttagttggtagaagaacccctggattggtgcttgattcaacaccattaccacct
aaggcatcatcttcgaaacgccaaaggttgacaccgaagaccgcattggcacccaagtcc
aggacacccaagagaagagtgaaaatggatgatgacacggttatacacgctgatattata
cggcagcagttgattagcactgaggatataaggcgcattcggagaaaggctccatgcacc
cgtactgaaatatggatgatcgagaaaggttcactagaagatgatatattccgcgagcct
atattttcctgtatgcacaaggacctgaacgatttacactatcgaacatatgagtctgtt
tctcagttcaccatacataacagggaaccgcaacgacaagtagacatatctgaaactatc
ccagcagataacagaaatgctggcacctctggtgcagaggaaagtgcagctcttgatcac
caacttcatatggttctaccagataccaacaatgttgacatctctggtgcaaaggacatt
gcagctcttgatcaccatctgaacatgggactaccagatggagctcacaacgttggcatc
tctggtgcaaatgatagtgcagctctggatcaccaacaaaatatgggactaccagatgga
gctcacaacgttggcatctctggtgcaaatgacagtgtagctcttgatcaccaacttcat
ataggactaccagatggagctcacaatgttggcatctctggcgcaaatgacagtgcagct
cttgttcaccaacttcatatgggactaccagatggagctcacagtgtcggcatctctggt
gcaaatgacagtgcagctcttgatcaccaacttcatatgggactaccagatggagctcac
ttagatgctacaccacaggaagcaactggtacagttgatgctacagctgcatttggtttg
caaatgccatctgacaaacttgataacaacattgagaaagtaactgaatttggtgacggg
aaagaaatcccacttgttgacgaaacaaatgctgttacagacattactgctcatgatgat
acactggataaggactgccatcatgatgtttcagcagacatgcagaggaatacaaatgct
gatacacctctatttgtgcaagatggcataacccatgattctgctactataacagatgct
ccagatgttgctttacatagttctggcccagcgtgtgcacaagcagtggacggtcgggaa
ggggaattgagtgagattgttcacagtgatattaatgcttttgaggataaggagatgccc
acttctgagatcactggactggaattgactgaatgtgcctctggttttcctcaaccaacg
gagcatgagaatgctgtgtcggccatgggagaaaattctggcttgcaagaaaacaatgca
ggatccttcacggacatggacaacaccgggcatgactttgcactgaaggaaatcagtgat
tttggaagtgcaattcatggtgttgacggcacagattttccacactatgatgatgatggg
gactttgatgaggcaattgatcttgatgatgatgatgatgagccaaatcctgacgaattc
cagtctcatgatgcacttagtggctggtcttctcgtaccaagggcgttgcaagatatctc
aagactttattcgatgaagagtctggtcgggggagaaagaatgttgtcattgatcatcta
gtgcatgggaagactcggaaagaagcttcaaggatgttcttcgagaccttggtgttgtcg
acgaaggactacattcaggtggagcaggtgaaccccttcgatttaataaacgtgaagcca
gtgtccaagctcctgaagacagatttctag
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integrated database retrieval system
