Hordeum vulgare subsp. vulgare (domesticated barley): 123445166
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Entry
123445166 CDS
T11213
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123445166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hvg03041
]
123445166
03009 Ribosome biogenesis [BR:
hvg03009
]
123445166
Enzymes [BR:
hvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123445166
Spliceosome [BR:
hvg03041
]
Complex A
U1 snRNP components
U1 related factors
123445166
Complex B
123445166
Ribosome biogenesis [BR:
hvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
123445166
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123445166
NCBI-ProteinID:
XP_044978051
UniProt:
M0XA42
LinkDB
All DBs
Position
3H:complement(568059413..568063912)
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AA seq
574 aa
AA seq
DB search
MNPYADNRYADPSSYRDRRSDLAAAPILAPPVPVVAAQNPYAAPYTPMAAPVGGYGQGGG
GYGGGMGYGGRGRGGGGGGPGGFRGGGGRGGSNGRDGLDSLSLPKPDFRGLIPFEKSFYV
ECPAVQAMSETEVAQYRQLRDITVEGREVPKPIRFFHEANFPDYCMQAIAKSGFVEPTPI
QAQGWPMALKGRDVIGIAETGSGKTLSYILPGLVHVGAQPRLEQGDGPIVLILAPTRELA
VQIQAEATKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAGHTNLR
RVTYLVLDEADRMLDMGFEPQIRKILAQIRPDRQTLYWSATWPREVETLARQFLQNPYKV
MIGTAELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKECDKVTRQLR
MDGWPALSIHGDKAQSERDYVLAEFKNGKSPIMAATDVAARGLDVKDIKCVINFDFPTTI
EDYIHRIGRTGRAGATGMAFTFFTHSNSKYSRNLVKILREAGQVVNPALEAMSKSAGSMG
GGSNFRSRGRGGFGGGGYGGNRSGSNSIPVRRRY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaatccctacgccgacaaccgctacgccgacccctcctcctaccgcgacaggcgcagc
gacctggccgcggctcccatactcgccccgccggtccccgtggtcgccgcgcagaacccc
tatgccgccccgtacacgcccatggccgcccccgtcggtggctacggccagggcggcgga
ggctatggtggaggcatgggatacggcggtaggggcagaggcggcggtggcggtggacca
ggcggcttccgtggcggcggtgggagaggtggcagcaacgggagggacgggctcgactcg
ctctccctgcccaagccggactttcggggccttataccgttcgagaagagcttctacgtg
gaatgccccgccgtgcaggccatgtcggagacggaggtggcgcagtaccgtcagctccgg
gatatcaccgtggagggccgggaggtgcccaagcctatccgcttctttcacgaagccaac
tttccagattactgcatgcaagcgatcgccaagtccggatttgtggaaccaacgcctatc
caagctcagggttggccgatggctttgaagggcagggacgtgattggtattgcagaaact
ggatctgggaaaacactatcttacattctacctggtttggttcatgttggtgcacaacct
cgactcgaacaaggtgatggcccaattgtcttgatccttgctccaacaagagaactggct
gttcaaatacaggcagaagctacaaagtttggatcatactcgagaactagaagcacatgt
atctacggtggagcacctaagggaccacaaatacgtgacctcaggagaggagttgaaatc
gtcattgcaacaccaggtcggttgattgatatgctggaagctggtcacacaaacctacgt
cgggttacataccttgtgctggatgaggcagaccgtatgcttgatatgggttttgaacct
cagattcggaaaatattagcacaaatccgtccagacaggcaaaccttgtactggagcgct
acatggccgagagaagttgaaacgttggctagacaatttctgcagaacccttacaaggta
atgataggaacagctgaacttaaagctaaccattccatacaacaaattgttgaagttatc
tcggatcatgaaaagtatcccaggctaagtaagcttctatctgatttgatggacgggagc
cgaatcttaatattttttcaaacaaaaaaggaatgtgacaaggtcactcggcaacttaga
atggacggatggccagcattatctatacatggtgataaagctcagtctgaaagggactat
gttctggcagagtttaagaatgggaagagtcctataatggctgccacagatgtagcggca
cgtggtcttgatgtgaaggatattaagtgcgtgattaattttgatttcccgacaactatc
gaagattatattcacaggataggtcgaactggccgtgctggtgctactggaatggccttc
acgttcttcacccattccaattcaaaatattcaaggaatctcgttaagatcttgcgtgaa
gctggacaggttgtgaatccagcgctagaagctatgtccaagtcagctggttccatggga
ggaggaagtaatttccggtcaaggggccgaggtgggtttggtggtggtgggtatggtggt
aaccgttctggatcgaattccattccagtacgtagaagatactaa
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