Hordeum vulgare subsp. vulgare (domesticated barley): 123446909
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Entry
123446909 CDS
T11213
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123446909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123446909
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123446909
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123446909
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
123446909
NCBI-ProteinID:
XP_044979387
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Position
4H:complement(4318542..4326580)
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AA seq
882 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPREKAKAETRDWLNSVVSDLENQIDNFEAELEGLSFKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLIKGVAVVSTTAVLSTKSPTATSPTQATVSTISQGTSQDQAEETTSIES
NPEPVPQTPPPKGGNLGPSVPAVPTAISTTAAAVSVSADTISSPGPVRPIIPAAAPTIFA
ASAAVRNAPESMPAVASTPANLSTAVKDDESMSFPPRRPSPAVTEISLGRGITRGLTSQA
LAAPISVGPVPGNGSITAIPAINDLSKRNISNTDERVNSGGLSQQLVSPLGSKIQQQPVL
KTNDAVSSDSSNTSESAVLGGRVFSPPVPGAQWRAQAPAGFQNQSETGQFRGRPEVTDQR
EKYLQRLQQVQQQQGNLLNASHITGINQKQFPTQQPNSLLQQFNSQSSSISSQGGLGLGV
QGPGIPSAFSSQLQPHESQILEQYAGQTKSDEQQGLADDAGVESAATTGPIKHTNEDDTK
APYSNPPASIAEGTQLSRDTDLSPGQPMQPGMPSSGVGVIGRRSVSDFGAIGDNLSGASV
VSGHDHLYNLQMLEAAYHRLPQPKDSERAKTYIPRHPSVTPASYPQIQAPIVTNPAFWER
LGSDTLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYE
RGSYVYFDFHLADDGNGWCQRIKNDFTFEYNFLEDELSVQPN
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtgctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcgctaccgggac
cagatcaagacctggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctcatggatgcccgcaagcagattgagcgcgagatggaacgatttaaggtc
tgtgagaaggaaactaaaaccaaggccttctcgaaagaagggttaggacaacagccgaaa
actgaccctagagagaaggctaaagctgaaacaagagattggcttaacagtgtggttagc
gatttggaaaatcagattgataattttgaagcggagcttgaagggctttcatttaagaaa
ggaaagcaaagacctcctcgattggtacatttagagaaatctattacgcgacataaggct
catataaaaaaattggagtcaattctgagactcttggataatgatgagttgagtcctgag
caagtcaatgatgtcaaagatttcctagaagactatgttgaacgtaatcaggaagatttt
gatgaatttagtgatgtcgaggatctctatagcacattgcctatggagaaggttgaagca
ctcgaagacatggtttcacttgctccttccagtcttatcaagggtgttgctgttgtttcc
actactgcagttttgagtacgaagagtccgacagcaacttcacctactcaggctactgta
tcaacaatctcacaaggtacatcacaagatcaagcagaggaaacaacttcaatagaaagc
aatcctgaaccggtgccacaaacaccacctccgaaaggtggaaatctgggaccatcagtg
ccagctgtgcccactgccattagtaccactgctgcagctgtttccgtttcggcggatacc
attagttccccaggcccagtgaggccaattattcctgccgcagcacccacaatatttgct
gcttctgctgctgttcgaaatgctccagagagcatgcctgcggttgcttcaactcctgca
aacttatctacggccgtgaaggatgatgaaagcatgagcttccctccacgtagaccgtct
cccgcagttactgaaattagtcttggcaggggtattacccgtgggttaactagtcaggca
ttagctgctcctataagtgtaggtccagttccaggaaatgggtccataactgcaattcct
gcaataaatgacttgtccaaacgaaacatatcgaatactgatgaaagggttaacagtggt
ggtctttctcagcagttggtttcacctcttggtagtaaaattcaacaacagccagttctg
aagactaacgatgcagttagctctgattctagtaacacaagtgaaagtgcagttcttgga
ggaagggtattttctcctcctgttcctggggctcagtggagggctcaagctcctgctggt
ttccaaaatcaaagtgaaactggtcaatttcgtggaagacctgaggtaaccgaccaaagg
gagaagtacttgcaaagattgcaacaagtacagcagcagcagggcaaccttcttaacgct
tctcatataacgggcatcaatcagaagcaatttccaacccagcagcccaattccctctta
cagcagtttaattctcagagttcttctatctcttctcaagggggccttgggctaggggtt
cagggaccaggtatcccttctgccttctcgtctcagctacaacctcatgaatcccaaatt
ctcgagcaatacgctgggcaaacaaaaagtgacgagcaacaaggcttggccgatgatgct
ggtgtggagtctgctgcaacaactggaccgattaagcacaccaatgaagatgacacgaag
gctccttactcgaatcctccagcatccatagcagaaggcacccagctatctagagacact
gatctatcacccgggcagcctatgcaacctggcatgccatcatctggtgttggtgttatt
ggccggaggagtgtatctgattttggagcaattggagacaatctcagtggagcttccgta
gtttctggtcacgatcacctttataatttgcaaatgctcgaagctgcataccacaggctt
ccacagcctaaggactctgagcgtgcgaaaacttatattccgaggcacccttcagtgacc
cctgccagttacccacagattcaggcaccaattgtgacaaatcctgccttttgggaaagg
ctcggtagcgatacattatctacagatatgctattctttgcattctactatcagcagaac
tcgtaccaacaatatttggccgctaaagaactaaaaaagcagtcatggagatttcacagg
aagtacaatacttggttccaacggcatgtggagccacaggtcacgacggatgagtatgag
cggggatcgtacgtgtactttgattttcatcttgcagatgatggaaatgggtggtgccaa
aggatcaagaacgacttcacatttgaatacaacttccttgaggatgaactgtcagtacaa
ccaaactag
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