Hordeum vulgare subsp. vulgare (domesticated barley): 123447339
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Entry
123447339 CDS
T11213
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123447339
03015 mRNA surveillance pathway
123447339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123447339
03041 Spliceosome [BR:
hvg03041
]
123447339
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123447339
Spliceosome [BR:
hvg03041
]
Complex C
Other components
EJC/TREX
123447339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
DUF5520
Motif
Other DBs
NCBI-GeneID:
123447339
NCBI-ProteinID:
XP_044979867
UniProt:
A0A8I7BBJ0
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All DBs
Position
4H:complement(13657875..13665146)
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AA seq
405 aa
AA seq
DB search
MAAAAEKTAEEIRRELQELQRQHREISERLRDPRGLRRGAPAAGLGPGPGGPRPLRGFAR
PAPEPADQPEPKRRLLSAVVKVDGSGTNEDDAEGRGDEPTAAQGGERRGASNGGFRRDGS
QWVSRRELDNQLPEPLPRPAPKEEDQSLVRRNKRMLGKLLVGTLEKFQQENKKLSNSEAF
MRRSEAQQKADQKAREDSERLRQQVREQAAEKRRRDMTLRARVAAKSEEKRLELLYIQWS
EHHKKLSSFLRTKAEPAIYYMPAKPIVDDPLIVEQNKEKAFEEWKSVRRTELTQFQKQVE
EQYLSNVERQLERIQNARNARRGNVPANMQEMDKELDTHRAEHGPKARRIPDGGNDEDDD
VDVDDMAAEDDLMDEVLGVNEAINEDPTKPSEEATDVAPVPEEAQ
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcggcggagaagacggccgaggagatccgccgcgagctccaagagctccag
cgccagcaccgcgagatcagcgagcgcctgcgcgacccccgaggccttcgacgcggcgct
cccgccgccggcctcggcccgggccccggaggcccccgcccgctccgcggcttcgccaga
cccgccccggagccggcggaccagcccgagcccaagcgccggcttctgtctgccgtggtt
aaagtggatggctctggaactaatgaggatgacgcagaggggcgaggggatgagccaact
gccgctcaaggtggcgagaggaggggagccagtaatggtgggttcaggagggatggaagc
cagtgggtatccaggagggagcttgataatcagctgccagagcctctcccgaggccggct
cccaaggaagaggaccagagcttggtgaggaggaacaagagaatgctggggaagcttctt
gttggcacgctagagaaatttcagcaagagaacaaaaaactttccaactcagaggctttt
atgcgtagatcagaggctcagcagaaggctgatcaaaaggctcgtgaggacagtgaaaga
ttgcggcagcaagtgcgggagcaagcagctgagaagcgtaggcgtgatatgacgcttcgt
gctcgagtagctgctaagtcagaagaaaagaggttggagctattgtacattcagtggtct
gagcatcacaaaaagctgtccagtttcttaaggacaaaagctgaaccagctatttattac
atgccggctaaaccaatagttgatgatccgcttattgttgagcaaaacaaggaaaaggca
tttgaagaatggaaatctgtgcgcagaacggagctcacacagtttcaaaagcaagttgag
gagcagtatctgtctaacgttgagaggcagctggaaagaattcagaatgcccggaatgct
cggagggggaacgtgcctgctaacatgcaggaaatggacaaggagctggacacacacagg
gcggagcatggccccaaggctcggcggatccccgacggtggcaacgacgaggatgatgat
gtggacgtggacgacatggccgcggaggacgacctgatggatgaagtgcttggcgttaat
gaggcgatcaacgaggacccgaccaagccatctgaagaggctaccgatgttgcccctgta
cccgaggaggcacagtag
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