Hordeum vulgare subsp. vulgare (domesticated barley): 123447640
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Entry
123447640 CDS
T11213
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123447640
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hvg01002
]
123447640
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hvg04131
]
123447640
04121 Ubiquitin system [BR:
hvg04121
]
123447640
Enzymes [BR:
hvg01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123447640
Peptidases and inhibitors [BR:
hvg01002
]
Metallo peptidases
Family M67
123447640
Membrane trafficking [BR:
hvg04131
]
Endosome - Lysosome transport
Others
Others
123447640
Ubiquitin system [BR:
hvg04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
123447640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
FGGY_C_2
Motif
Other DBs
NCBI-GeneID:
123447640
NCBI-ProteinID:
XP_044980185
UniProt:
A0A8I6XLY5
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All DBs
Position
4H:24095511..24102923
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AA seq
523 aa
AA seq
DB search
MAMASPRQAGRHINIEGMARPVAVDHRISLPYYFRIADNLLRQANIYREEKNLIDLYIIL
LRYSSLLSETIPKHRDYHAFKSREKEFLKKGPHNSDKLLNVISELESLKPIVKQQIAELN
RRAAEERNGPHETYAGNGASSRTDQLAASPYMMQPAFGSSTGPLQKSSSRWNHQEASQQG
VEPDRHLVKSYASLPYPKDETLSRHSILGPNGLHGQWTRPVTGVKIQYPSYPELTQSNIP
SLVPAILNQNDSHGPNTTSLDGLTNNNGDMQSVLSLDDGQWSLPVKETASVSPASFEEEF
SQLNIRQPNPPPVLAQVHPERRPISPSRVADPRPGAATCDTGRFQNLHVPVALMESFLRL
AEANTAKNLETCGILAGNLKKRTFYVTTLIIPKQESTSDSCQATNEEEIFEVQDKGSLFT
LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVI
HDCQESGFHPHEEPLDGTSIYEHCSHVYMNPTVKFDMIDLRRV
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccatggcatcacctcggcaagccgggaggcacataaacatcgaggggatggcgcgt
ccggtcgccgtggaccaccgcatcagcctcccctactacttccgcatcgccgacaatctt
ctccgccaggcgaacatataccgagaggaaaagaacctcatcgacctgtacattatcctc
ctgagatactcgagcctgttgtctgagacgatcccgaagcatcgcgattaccatgcattc
aagtcaagagaaaaagaattcctgaagaaagggccgcataactctgataaactcttgaat
gttatcagtgagctagagtctctgaagccgattgtgaaacagcaaattgctgagcttaat
agacgggctgcagaagaacgtaatggtccacatgaaacctatgctggaaatggtgcaagc
agtaggacagatcagcttgctgcaagtccatatatgatgcagccagcgtttggaagctca
acaggaccattgcagaaatcgtcctctaggtggaaccatcaagaagcatcacaacagggt
gttgaacctgataggcatctagtcaaatcatatgccagtttgccatatccaaaagatgaa
acactatccagacattcaatacttggtccgaatgggcttcatggccaatggacaaggcct
gttactggtgtcaagatccagtatccaagttaccctgaactgacccaaagcaatatccct
agtttagttccagcaatcttgaaccaaaatgactcacatggtcctaatacaacatcgctg
gatggattgacaaataacaatggtgatatgcagtctgttctctcacttgatgatggtcag
tggtctctaccagtaaaagagacagcctctgtgtctcctgctagtttcgaggaagaattc
tcccagctgaatatcagacagcctaaccccccaccagtcctggcacaagtacatcccgag
cgtagaccgatttctccatcaagagtagctgatccaagaccaggagctgctacctgtgac
acaggacgttttcaaaatttgcatgtgccagtggcgttaatggagtcttttctgcgactt
gctgaggcaaatactgcaaaaaatctggaaacatgtgggattcttgctggtaacctgaaa
aagagaactttttatgtgacgacactgataattcctaagcaggaatcaacgtctgattca
tgtcaagctacaaatgaagaggaaatatttgaagttcaggacaaaggctcacttttcact
ctcggttggattcatacacatccgacacagacctgctttctatcttccattgatcttcat
aatcattattcgtatcaggtcatgcttcctgaagcaattgcaattgtcatggcgcctacc
gatacaacaaggaaacacggcatatttcacctcacggatccaggtggcatgggggtgatc
cacgattgccaggagagtggtttccatccccatgaggagcctctagatggcacttcaatc
tacgagcattgctctcatgtgtatatgaaccccactgtgaagtttgatatgatcgacctc
cgtcgcgtgtga
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